BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489060
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22080.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1648 0.0
> AT5G22080.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:7310378-7313619 REVERSE LENGTH=1042
Length=1042
Score = 1648 bits (892), Expect = 0.0
Identities = 997/1046 (95%), Gaps = 14/1046 (1%)
Strand=Plus/Plus
Query 1 TCTTCGTTCTCTACTCTTGTCGTCGTTggaagaaggaggaagagagaggacaagagaatc 60
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2 TCTCCGTTCTCTACTCTTGTCGTCGTTGGAAGAA-GAGGAAGAGAGAGGACAAGAGAATC 60
Query 61 ataagaag-aca-agagtcatgggagaggTGAAAGTAGACGACGATGCGATTCTTAAATC 118
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAGAAGAAGACATAGTCATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATC 120
Query 119 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGTCAGGATTCTCTCATG 178
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGGCAGGATTCTCTCATG 180
Query 179 CTTCAAGCTGAACCCGTTTGAGCATCTTAACCTCTCTTTTGATTCTTCCACGGATGATGT 238
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CTTCAAGCTGAATCCGTTTGAGCATCTTAACCTCTCTTTCGATTCTTCCACGGATGATGT 240
Query 239 TAAAAGGCAGTATAGAAAGATTTCTTTGATGGTGCATCCTGACAAATGCAAGCATCCACA 298
|||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 241 TAAAAGGCAGTACAGAAAGATTTCTTTGATGGTTCATCCTGATAAATGCAAACATCCACA 300
Query 299 AGCACAGGAGGCTTTTGGAGCATTGGCAAAAGCCCAACAACTACTGCTAAACGACCAAGA 358
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 301 AGCACAGGAGGCTTTCGGAGCATTGGCAAAAGCGCAACAACTGCTGCTAAACGACCAAGA 360
Query 359 AAGAGATTATATTCTCACCCAAGTCCATGCGGCAAAAGAAGAGCTTAAGATGAAGAGAAA 418
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 AAGAGATTATATTCTTACCCAAGTCCATGCTGCAAAAGAAGAGCTTAAGATGAAGAGAAA 420
Query 419 GAAACAGTTAAAGAAAGATACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAACAGTTAAAGAAAGACACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 480
Query 479 TGAACACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGAGCACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 540
Query 539 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCagaagaaga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGA 600
Query 599 gggaagactgaagaaggatgaagcagaacaaaaggagatatggaagaaaaagCGTGAGCA 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGGAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCA 660
Query 659 TGAAGAACAGTGGGAAGGGACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAAGAACAGTGGGAAGGAACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 720
Query 719 ATCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGTCCTCCAAAATTGAAGACAGAGGATCC 778
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 AGCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGACCTCCAAAATTGAAGACAGAGGATCC 780
Query 779 GAACAAATCGTACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTACCTTCTTTTGTTTC 838
||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 781 GAACAAATCATACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTGCCTTCATTTGTTTT 840
Query 839 TGCTGTTGTTGACATTGATAGAT-T-GGTCTTCTAGAGGATACTCTCAGACTCTCTCTTC 896
||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||||||
Sbjct 841 TGCTGTTGTTGACATTGATAGATATTGGTCTTCTCGAGGATAATCTCAGACTCTCTCTTC 900
Query 897 TTGTGTCTGT-T--CTTCTCTTTGTACATCATCAACTTCATTTGTCTTTCCAAATACATC 953
|||||||||| | |||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 901 TTGTGTCTGTGTTTCTTCCCTTTGTACATCACCAACTTCATTCGTCTTTCCAAATACATC 960
Query 954 AGAAACAGGGAAGAGATATCTCACTTCTCACACGCTCATGACCTTAACTTTGTATTGCGT 1013
||| ||||||||| |||||||||||||||||| | ||||||||||||| |||||||
Sbjct 961 AGAGACAGGGAAGCGATATCTCACTTCTCACAT--T-ATGACCTTAACTT---ATTGCGT 1014
Query 1014 CTTAGTCCAGATGATGTCTTTAGCCT 1039
|| ||||||||||||||| |||||||
Sbjct 1015 CTCAGTCCAGATGATGTCATTAGCCT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5