BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489087
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22340.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1696 0.0
> AT5G22340.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to
43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:7394473-7396875 FORWARD LENGTH=1325
Length=1325
Score = 1696 bits (918), Expect = 0.0
Identities = 1175/1291 (91%), Gaps = 50/1291 (4%)
Strand=Plus/Plus
Query 1 TCTCTCGCTACATGGAGAGTCTCTCGATTCCCGCCGCTTCTTGGTTTTCCGGCGGAACCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TCTCTCGCTACATGGAGAGTCTCTCGATTCCCGCCGCTTCTTGGTTTTCCGGCGGAACCA 85
Query 61 TTCCTCCGACGAATGTAAGAATTTCTCTACCGTATCATCTTCGGAGACCATCG-AACAGG 119
||||||||||||| || ||| |||||| ||| ||||||| ||| |||| || ||||||
Sbjct 86 TTCCTCCGACGAAGGTGAGAGTTTCTCCGCCGCATCATCTCCGGCGACC-TCCCAACAGG 144
Query 120 AATTCCCCTCGCTTGTCCGCCATTAACGCCGCTTCTCGCTCTGTGAGTGAGCTAGTGGAG 179
||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 145 AATTCCCATCGCTTGGCCGCCATTAATGCCGCTTCTCGCTCTGTGAGTGAGCTAGTGGAG 204
Query 180 GAGGATGTGTTGCAAATGTTCTTGAAAGACAGAGAAGAAAATGGAGATTTCATTTCTAAA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 205 GAGGATGTGTTGCAAATGTTCATGAAAGACAGAGAAGAAAATGGAGATTTCATATCTAAA 264
Query 240 GTTTCTGATAGGCTCTGGTTAAAGGACATTCTCGAATCTATTGATCTTAATTCTAATGGA 299
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 265 GTTTCTGATAGGCTCTGGTTAAAGGAGATTCTCGAATCTATTGATGTTAATTCCAATGGA 324
Query 300 GCTTCCTCTTCAACTGTTGGACTAGA-GA--CTCAGGAGAGCTTGATAGCTGCCGTAgat 356
||||| |||||| |||||| |||||| || ||| ||| |||||||||| || || |
Sbjct 325 GCTTCTTCTTCAGCTGTTGAACTAGATGATACTCGGGAAAGCTTGATAGATGGCGC---T 381
Query 357 gatgatgatgatgaAAGTGGTTTCTTGAAACTTAAACCGACACAAGAATGGATTGGTTGG 416
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GATGATGATGA--AA-GTGGTTTCTTGAAACTTAAACCGACACAAGAATGGATTGGTTGG 438
Query 417 GAGAGTGATTCCGCTCCCATTAATAAGAAAGCTCTAGCTAAGGCATTACGGGATGACAGG 476
||||||||||| || ||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 439 GAGAGTGATTCTGCCCCCATGAATAAGAAAGCTCTAGCTAAGGCACTACGAGATGACAGC 498
Query 477 GAGAGAATGAAGAAATTTAACTTGCTGAAATATGAAGCTCTGAAGCGTGAACTGATGTAC 536
||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 499 GAGAGAAGGAAGAAGTTTAACTTTCTGAAATATGAAGCTCTGAAGCGTGAACTCATGTAC 558
Query 537 CTGTCGATTGTAATTGGAACTGGGTGTAGCGGATATTGCTTACTAGCTTTATCAGTTCAG 596
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 559 CTGTCGATTGTAATTGGAACTGGATGCAGCGGATACTGTTTACTAGCTTTATCAGTTCAG 618
Query 597 GCTGCAGTCAGTTATGCAGTTGGGGTTCTTTTCAGTTGCTTGTACCTTCAGCTTTTATAC 656
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 619 GCTGCAGTCAGTTATGCAGTTGGGGTTCTATTCAGTTGCTTGTACCTTCAGCTTTTGTAT 678
Query 657 GGATACGCTGATGGGCTTTCACGTGAAGCTGTTCCTGGTATCTTCCTGaaaaaaaagtct 716
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 679 GGATACGCTGATGGTCTATCACGTGAAGCTGTTCCTGATATCTTCCTGAAAAAAAAGTCT 738
Query 717 aaaaaaaTCGGGATCAGAAGTGAAGACCTTGAGGTCTTTGTAGAAAGGACCATCAGGGGC 776
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 739 AAAAAAATCGGGATCAGAAGTGAAGACCTTGAGGACTTTGTAGTGAGGACAATCAGGGGC 798
Query 777 AGCGGTC-TGGCTCTCTCTTCTCCACGCCTGGTGATCCCTGCTGCAATTTATGGTTTGTG 835
|| || | |||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 799 AGTGG-CATGGCTCTCTCTTCTCCACGCTTGGTGATACCAGCTGCAATTTATGGTTTGTG 857
Query 836 GATACTCTCTCACAAGTATTTCCAGAACGACTTGTTCGACTTTCAGATAGTTCCAGCCAT 895
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||
Sbjct 858 GATACTCTCTCACAAGTATTTCCAGAACGACTTGTTCGACTTTCAG-T--T-CCAGCAAT 913
Query 896 GGTTGGTTTGTTTGTATACAAAGCCGCAGCTCTGGTTCAAGTGTACAGAGACAACCAAGA 955
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 914 GGTTGGTTTGTTTGTATACAAAGCTGCAACTCTCGTTCAAGTGTACAGAGACAACCAAGA 973
Query 956 TCTTCAGTTCATCTTCCCAGATGACTACTAACTACAAAGTTCACAAG----------AGA 1005
||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 974 TCTTCAGTTCATCTTCCCAGATGACTACTAACTGCAAAGTTCACAAGCGGCCTTCCGAGA 1033
Query 1006 --GACCAGGGAATCGCAGAATTGTGAATTGTTCGGTACATATTTTGAGAGAGGA---G-- 1058
||||||| || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 TAGACCAGGAAACCACAGAATTGTGAATTGTTCGGTACATATTTTGAGAGAGGAACAGGA 1093
Query 1059 -CAGAAGCTAGACTCATCCGCTAAGACCGTGGATATAGTGAGTTATAGATCAAAACGGCG 1117
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1094 ACAGAAGCTAGACTCATCCGCTAAGACCGAGGATATAGTGAGTTATAGATCAAAACGGCG 1153
Query 1118 TTATTT-GGCTCTTCT-CAAAAGCAAAGCAACCTCTTCTATTTTTAAAAACATTCTGGGT 1175
|| ||| |||| || | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1154 TT-TTTCGGCTTTTTTTCAAAAGCAAAGCAACCTCTTCTATTTTTTAAAACATTCTGGGT 1212
Query 1176 TTACTACTTTTCTAACGAAAACAATAATACAATGTTTATCTGCATGACTTGA-TGAGTTT 1234
| ||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1213 T-ACT--TTT-CTAACGAAAACAATAATACAATGTTTATATGCATGACTTGAATGAGTTT 1268
Query 1235 AC--TA---TAT-T-GGATTTTGCTTCTTTC 1258
|| || ||| | ||||||||||||||||
Sbjct 1269 ACAATAAACTATATTGGATTTTGCTTCTTTC 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5