BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489094
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22380.1 | Symbols: anac090, NAC090 | NAC domain containing ... 1153 0.0
> AT5G22380.1 | Symbols: anac090, NAC090 | NAC domain containing
protein 90 | chr5:7408777-7410102 REVERSE LENGTH=919
Length=919
Score = 1153 bits (624), Expect = 0.0
Identities = 755/819 (92%), Gaps = 5/819 (1%)
Strand=Plus/Plus
Query 1 AGCTACAATTAATTAGAGTTTTTCTTAATATTACCTATATCGTACAAAAATGGCGGATGA 60
|||||||| |||||||||| |||||| | ||| |||||||||||||||||| |||||
Sbjct 16 AGCTACAACTAATTAGAGTGTTTCTTGTTGTTAAAAATATCGTACAAAAATGGCCGATGA 75
Query 61 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAGGAACTGGTTGCGTTCTACCTACG 120
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 76 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGTTCTACCTACG 135
Query 121 AAACCAGCTTGAAGGAAGGAGTGACGACTCAATGCACCGTGTCATTCCTGTTCTTGATGT 180
||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| ||
Sbjct 136 AAACCAGCTCGAAGGAAGGAGTGATGACTCAATGCATCGTGTCATTCCCGTACTTGACGT 195
Query 181 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCGGGAGTGAGATGTCGAGGAGACGC 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 196 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGC 255
Query 241 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCTAGAGGAGGTAGACCGAG 300
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 256 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAG 315
Query 301 TAGAACCACGGGGTCAGGATACTGGAAAGCGACTGGATCACCTGGTCCTGTCTTTTCCAA 360
|||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 316 TAGAACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTCCAA 375
Query 361 CGACAACCGAATGATTGGAGTCAA-GAAAACTATGGTTTTCTACACTGGGAAAGCACCAA 419
|||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||| |
Sbjct 376 AGACAACAAAATGATTGGAG-CAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCA 434
Query 420 CCGGAAGAAAAACAAAATGGAAGATGAATGAGTACAAAGCCGTTGACGAAACAGTCAACG 479
| ||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 435 CAGGAAGAAAAACTAAATGGAAAATGAATGAGTACCACGCCGTTGACGAAACAGTCAACG 494
Query 480 CTTCCACAATCCCTAAGTTGAGACATGAATTCAGTTTATGTCGTGTCTACATAACAACAG 539
||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 495 CTTCCACAATCCCTAAGCTGAGACGTGAGTTCAGTTTATGTCGAGTCTACATAACAACAG 554
Query 540 GAAGCTCCAGAGCTTTTGATAGACGTCCTGTGGAAGTTTTGCAGACAGAGAGAATGCTTA 599
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 555 GAAGCTCCAGAGCTTTTGATAGACGTCCTGAGGGAGTTTTGCAGACAGAGAGAATGCTAA 614
Query 600 CAAGTGATGTTGCGGTGGCTGAGACATCGTTTCGTGTCGAAAGCTCA-TCGGAAACTTCG 658
||||||||||||| || |||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct 615 CAAGTGATGTTGCAGTAGCTGAGACATCGTTCCGTGTGGAAAGCTCACT-GGAAACTTCG 673
Query 659 ATTTCAGGAGGAGAAAATATTGATCTCTCTATGAGTACAGAGTTGGTTGATGGATTAACA 718
||||||||||||||| |||||||| ||||||||| |||||||| ||||||||| || ||
Sbjct 674 ATTTCAGGAGGAGAACATATTGATGTCTCTATGAACACAGAGTTTGTTGATGGACTATCA 733
Query 719 GAACCAATCTGGGAATGGGAACAGCTGAGTTGGCCTTGAAGCTATATAGATTTTATAATG 778
||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 734 GAACCGATGTGGGACTGGGAACAGCTGACTTGGCCTTGAAGCTATATAGATTTTATAATC 793
Query 779 AAGCAAATTTAAG-TTGTTTCAATTGCTTATTGTTAGTT 816
|||||||||||| |||||||||||||||||||||||||
Sbjct 794 AAGCAAATTTAAACTTGTTTCAATTGCTTATTGTTAGTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5