BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489159
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23060.1 | Symbols: CaS | calcium sensing receptor | chr5:77... 1982 0.0
> AT5G23060.1 | Symbols: CaS | calcium sensing receptor | chr5:7736590-7738535
REVERSE LENGTH=1457
Length=1457
Score = 1982 bits (1073), Expect = 0.0
Identities = 1241/1320 (94%), Gaps = 19/1320 (1%)
Strand=Plus/Plus
Query 1 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAGAAT-TAGAGATTCTTTGTCTCTTTC 59
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 23 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAG-CTCTAAAGATTCTTTGTCTCTTTC 81
Query 60 TCTGTCGCATTGATTCG-AAAAAAGTGTGGCAGa-aaaaaaCATGGCTTTGGCGGAGATG 117
||||||||||||||| | |||||||||||||||| | ||| ||||||| ||||||| |||
Sbjct 82 TCTGTCGCATTGATTTGTAAAAAAGTGTGGCAGAGAGAAACCATGGCTATGGCGGAAATG 141
Query 118 GCTATGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTTCCAAGAAG--A 175
|| | ||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 142 GCAACGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTACTAAGAAGACA 201
Query 176 C--A--CTGAGACAAATCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 231
| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CTGAGTCTGAGACAAGTCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 261
Query 232 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTTCCAAGGACCAAATC 291
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 262 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTCCCAAGGACCAAATC 321
Query 292 GTCTCCTCTATCACTGAAGTGGAGAAAACAATCAATCAAGTTCAAGAAACTGGTTCTAGT 351
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 GTCTCCTCTCTCACTGAAGTGGAGAAAACAATCAACCAAGTTCAAGAAACTGGTTCTAGT 381
Query 352 GTTTTTGATGCAACTCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTGAAACCAGCTTTG 411
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 382 GTATTTGATGCAACGCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTTAAACCAGCTTTG 441
Query 412 GACACTGCTTTACC-ACTCGCAAAGCAAGCTGGTGAAGAAGCTATAAAGCTTGCTTCTCC 470
|||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 442 GACACTGCTTTACCCATT-GCAAAGCAAGCTGGTGAAGAAGCTATGAAGCTTGCTTCTCC 500
Query 471 TGCTTTCTCAGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 530
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGCTTTCTCTGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 560
Query 531 AGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCTCAACAGACGACAAAAGC 590
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 561 TGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCACAACAGACGTCAAAAGC 620
Query 591 GATAGAAGATGCTAAGCCGATTGCTTCGTCGACCATTGAGACGATTTCTTCAGCTGATCC 650
||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||
Sbjct 621 GATAGAAGATGCTAAACCGATTGCTTCATCGACCATGGATACGATTTCTTCAGCTGACCC 680
Query 651 TAATGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 710
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TAGTGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 740
Query 711 TTGGTCTGCCATTTCTTTTAACTTCCGTGGATACAAAGGTGATCTCACGCCGGCTCAAAC 770
|| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 741 TTTCTCTGCCATCTCTTTTAACTTCCGTGGTTACAAAGGTGATCTTACGCCGGCTCAAAC 800
Query 771 GCTTGATCTTCTTTGCACCAAGAACTACTTGATGGTAGATATAAGATCAGAGAAAGACAA 830
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 801 GCTTGACCTTCTTTGCACCAAGAACTACTTGATGGTGGATATAAGATCAGAGAAAGACAA 860
Query 831 GGAGAAAGCCGGGATTCCACGGCTCCCTTCAAATGCTAAGAACCGTGTGATCGCCATTCC 890
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 861 GGAGAAAGCCGGGATTCCACGGCTCCCTTCGAATGCTAAGAACCGCGTGATCTCCATTCC 920
Query 891 ATTAGAAGAACTACCGAACAAAGTAAAAGGAATTGTGAGGAACTCGAAACGGGTTGAAGC 950
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 921 ATTAGAAGAACTACCAAACAAAGTAAAAGGAATCGTGAGGAACTCTAAACGAGTTGAAGC 980
Query 951 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAGAATCAACAAAGGCTCCAATATCAT 1010
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 981 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAAAATCAACAAAGGCTCCAATATCAT 1040
Query 1011 CATCTTGGACTCGTACTCGGATTCGGCTAAAATAGTGGCGAAAACGTTAAAGGTTCTCGG 1070
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1041 CATCTTGGACTCGTACACGGATTCGGCTAAGATAGTGGCGAAAACGTTAAAGGTTCTCGG 1100
Query 1071 GTTCAAGAATTGTTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1130
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GTACAAGAATTGCTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1160
Query 1131 CCGGTTAGGCACTGATTCTTACAACTTCTCGTTCGCGCAAGTCTTGTCTCCATCGCGTAT 1190
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1161 CCGTTTAGGCACTGATTCTTACAACTTCTCGTTTGCACAAGTCTTGTCTCCATCGCGGAT 1220
Query 1191 TATCCCGGCAGCTTCTAGAAGTTTTGGCACTAGATCCGGAACCAAGCTCCTTCCTAGCTC 1250
||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1221 TATCCCGGCAGCTTCGAGAAGCTTTGGCACTAGGTCCGGAACCAAGTTCCTTCCTAGCTC 1280
Query 1251 CGAGTGAAAAACAAGAGGATACTATATATGGTTTAAAAGTGTTGTTTTA-TATTCCCTTT 1309
||| |||||| || ||||||| |||||| | |||| ||||||||||| | |||||| |||
Sbjct 1281 CGACTGAAAA-CA-GAGGATA-TATATA-GTTTTACAAGTGTTGTTT-AGTATTCC-TTT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5