BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489176
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23210.1 | Symbols: SCPL34 | serine carboxypeptidase-like 34... 2881 0.0
AT1G28110.1 | Symbols: SCPL45 | serine carboxypeptidase-like 45... 71.3 3e-11
AT2G33530.1 | Symbols: scpl46 | serine carboxypeptidase-like 46... 69.4 1e-10
> AT5G23210.1 | Symbols: SCPL34 | serine carboxypeptidase-like
34 | chr5:7810683-7815039 FORWARD LENGTH=1911
Length=1911
Score = 2881 bits (1560), Expect = 0.0
Identities = 1754/1846 (95%), Gaps = 19/1846 (1%)
Strand=Plus/Plus
Query 1 TTTTCCAGAATTTGATTTTTCTCATGTGTCTTATCTTATGAATATGGTTACCACCCAGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 TTTTCCAGAATTTGATTTTTCTCATGTGTCTTATCTTATGAATATGGTTACCACCCAGTG 81
Query 61 AGACTACAGAGTGTTCTTATCTGTCTCTGAAT-CCATtctctctctctctcAACACATTA 119
|||||||||||||||||||||||||||||||| |||||||||||||| | | | ||||||
Sbjct 82 AGACTACAGAGTGTTCTTATCTGTCTCTGAATCCCATTCTCTCTCTCACAC-A-ACATTA 139
Query 120 TATAAACTTACACAGTCACTTCACAATTTCTACAAATTCGATTTTATTAAATTATAATAA 179
||||| |||||||||||||||||||||||| |||||||||| | ||||||| ||||||||
Sbjct 140 TATAAGCTTACACAGTCACTTCACAATTTCCACAAATTCGA-TATATTAAACTATAATAA 198
Query 180 AATAAAAAGAAATGGGTTCTCATAGTTTTGAGTTCTCTGTTCTTGTCCTATTTCTTGTGT 239
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 199 ACTAAAAAGAAATGGGTTCTCATAGTGTTGAGTTCTCTGTTCTTGTCCTATTTCTTGTGT 258
Query 240 CCTTTCTTCTTGGCTCATCATCAGCAGAAAAGCTGTGCAGTGACAACGACGGCGACAACG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CCTTTCTTCTTGGCTCAACATCAGCAGAAAAGCTGTGCAGTGACAACGACGGCGACAACG 318
Query 300 GTTGTTTCCGGTCTAGGGTTTTGTCGGCGCAACGAGCTGATCGAGTGAAGGAGCTTCCGG 359
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 319 GTTGTTTCCGGTCTAGGGTTTTGGCAGCGCAACGAGCTGATCGAGTGAAAGAGCTTCCGG 378
Query 360 GACAGCCACCGGTGAAATTCCGGCAATACGCCGGTTATGTGACGGTTAATGAAACACATG 419
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GACAGCCGCCAGTGAAATTCCGGCAATACGCCGGTTATGTGACGGTTAATGAAACACATG 438
Query 420 GAAGAGCATTGTTCTATTGGTTCTTTGAAGCCACTCATAATCCAAGCAAAAAACCTCTCC 479
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 439 GAAGAGCATTGTTCTATTGGTTCTTTGAAGCCACTCAGAATCCAAGCAAAAAACCTGTCC 498
Query 480 TCCTTTGGCTCAATGGAGGACCTGGATGTTCATCAATTGGATTTGGAGCAT-CAGAAGAA 538
|||||||||||||||||||||| |||||||||||||| ||||| ||||| | ||||||||
Sbjct 499 TCCTTTGGCTCAATGGAGGACCGGGATGTTCATCAATCGGATTCGGAGC-TGCAGAAGAA 557
Query 539 CTTGGACCATTCTTCCCTCAAAACTCGAGTCAGCCTAAACTCAAGCTAAATCCATACAGC 598
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CTGGGACCATTCTTCCCACAAAACTCGAGTCAGCCTAAACTCAAGCTAAATCCATACAGC 617
Query 599 TGGAACAAAGCGGCGAATTTGTTATTCTTGGAATCGCCGGTTGGAGTTGGATTCTCCTAC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TGGAACAAAGCGGCGAATTTGTTATTCTTGGAATCGCCGGTTGGAGTTGGATTCTCCTAT 677
Query 659 ACTAACACAAGCCGTGATATAAATCAACTCGGCGACACCATCACAGCGAGAGACTCGTAC 718
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 678 ACTAACACAAGCCGTGATATAAAACAACTCGGCGACACTGTCACAGCGAGAGACTCGTAC 737
Query 719 AATTTCCTTGTCAACTGGTTCAAGAGA-TTCCCTCAATACAAGTCACACGAATTCTACAT 777
|| |||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct 738 AACTTCCTTGTCAACTGGTTCAAGAGATTTCCC-CAGTACAAGTCACACGACTTCTACAT 796
Query 778 CGCCGGTGAAAGCTACGCCGGCCATTACGTTCCTCAACTTTCGGAGCTCATCTACAATGA 837
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 797 TGCCGGAGAAAGCTACGCCGGCCATTACGTCCCACAACTTTCGGAGCTCATCTACAAAGA 856
Query 838 AAACAAGATTGCGCCCAAGAAAGATTTCATTAATCTTAAGGGTTTAATGATAGGAAACGC 897
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 857 AAACAAGATTGCGTCCAAGAAAGATTTCATTAATCTCAAGGGTTTAATGATAGGAAACGC 916
Query 898 GTTATTAGATGACGAAACGGATCAAAAGGGGATGATAGAATATGCATGGGATCACGCGGT 957
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GTTATTGGATGACGAAACGGATCAAAAGGGGATGATAGAATATGCATGGGATCACGCGGT 976
Query 958 GATATCAGATGCATTGTACAAGAAAGTGAATC-AAAACTGTGATTTCAAACAAAAACTTG 1016
||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||||
Sbjct 977 GATATCAGATGCATTGTACGAGAAAGTGAA-CAAAAACTGCGATTTCAAACAAAAACTTG 1035
Query 1017 TGACCAAGGAATGCAATG-CGGCTCTAGATGAGTATTTTGATGTATACAAGATCCTTGAC 1075
|||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 TGACCAAGGAATGCAACGAC-GCTTTAGATGAGTATTTTGATGTATACAAGATCCTTGAC 1094
Query 1076 ATGTACAGTCTGTACTCTCCGAAGTGTGTCCCCACCACCTCCACGAACTCCTCTACTTCT 1135
||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1095 ATGTACAGTCTGTACGCTCCAAAGTGTGT--CC-CCACCTCCACGAACTCCTCTACTTCT 1151
Query 1136 CATTCAGTCGCTGGAAACCGCCCCTTACCCGCGTTCCGAAGCGTTCTCCGACCCCGTCTC 1195
||||||||||| |||||||||||| ||||||| ||||||||| |||| ||||||||||||
Sbjct 1152 CATTCAGTCGCCGGAAACCGCCCCCTACCCGCATTCCGAAGCATTCTACGACCCCGTCTC 1211
Query 1196 ATCTCTCACAATGAAGGATGGAGGAGGATGGCGGCCGGGTACGACCCATGTGCATCGGAG 1255
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1212 ATCTCTCACAATGAAGGATGGAGGAGGATGGCCGCCGGGTACGATCCATGTGCATCAGAG 1271
Query 1256 TATACAGAAAAGTATATGAACAGGAGAGATGTTCAGGAGGCACTTCACGCTAATGTCACC 1315
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1272 TATACAGAAAAATATATGAACAGAAAAGATGTTCAGGAGGCACTTCACGCTAATGTCACC 1331
Query 1316 AACATCTCTTACCCTTGGACTCATTGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AACATCTCTTACCCTTGGACTCATTGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCC 1391
Query 1376 GCTTCTATGCTTCCAACCTTAAGAACACTTGTATCAGCGGGATTACGCGTATGGGTTTTC 1435
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1392 GCTTCTATGCTTCCAACCTTAAGAACACTTGTTTCAGCGGGATTACGCGTATGGGTTTTC 1451
Query 1436 AGTGGGGATACAGATGGACGAATCCCAGTGACCGCAACCAGATACTCATTAAAGAAGCTT 1495
|||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1452 AGTGGGGATACAGACGGGCGAATCCCCGTGACCGCAACCAGATACTCACTAAAGAAGCTA 1511
Query 1496 GGTCTTAAGATAGTCCAAGACTGGACACCTTGGTACACCAAACTACAGGTCGGAGGGTGG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 GGTCTTAAGATAGTCCAAGACTGGACACCTTGGTACACCAAACTACAGGTCGGAGGGTGG 1571
Query 1556 ACGGTGGAGTATGATGGGTTAATGTTTGTGACGGTAAGAGGAGCGGGACACCAAGTTCCG 1615
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1572 ACGGTGGAGTATGACGGTTTAATGTTTGTGACGGTAAGAGGAGCGGGACACCAGGTTCCG 1631
Query 1616 ACATTCAAACCTAGAGAAGCTCTTCAGCTCGTTCATCATTTTCTAGGCAATAAGAAACTT 1675
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1632 ACATTTAAACCTAGAGAAGCTCTTCAGCTCATTCATCATTTTCTAGGCAATAAGAAACTT 1691
Query 1676 CCTACATATCCCTTTTGATATATTCTCAACCCACAGATTTTATCATCTTTATATAATTCT 1735
||||| | ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1692 CCTACTTTTCCCTTTTGATATTTTCTCTACCCACAGATTTTATGATCTTTATATAATTCT 1751
Query 1736 TAAGAA-AATAATAAACAGATTTGAGCAAAACT-GGCCATTATATTAGAATTGTATATAT 1793
||| || |||||||||||||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 1752 TAA-AACAATAATAAACAGATTTGAGCAAAA-TAGGCCATTATATTAGAATTGTACAAAT 1809
Query 1794 GATTTATCGCGTTTTACATGTTTTCTCGTGTTACTGTGACCTCTAA 1839
| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1810 GTTTTATCGCGTTTTACATGTTTTCTCGTGTTACAGTGACCTCTAA 1855
> AT1G28110.1 | Symbols: SCPL45 | serine carboxypeptidase-like
45 | chr1:9803865-9806896 REVERSE LENGTH=1738
Length=1738
Score = 71.3 bits (38), Expect = 3e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 470 AAACCTCTCCTCCTTTGGCTCAATGGAGGACCTGGATGTTCATC 513
||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 284 AAACCTCTCGTCCTCTGGCTCAATGGAGGACCTGGATGTTCATC 327
> AT2G33530.1 | Symbols: scpl46 | serine carboxypeptidase-like
46 | chr2:14197646-14200560 REVERSE LENGTH=1642
Length=1642
Score = 69.4 bits (37), Expect = 1e-10
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 470 AAACCTCTCCTCCTTTGGCTCAATGGAGGACCTGGATGTTCATCAATT-GGAT-TTGGAG 527
||||||||| | || |||||||||||||||||||||||||||||| || || | |||| |
Sbjct 250 AAACCTCTCGTTCTCTGGCTCAATGGAGGACCTGGATGTTCATCA-TTAGG-TGTTGGTG 307
Query 528 CAT 530
|||
Sbjct 308 CAT 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5