BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489194 Length=1183 Score E Sequences producing significant alignments: (Bits) Value AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily... 1640 0.0 AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily... 579 3e-164 > AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily protein | chr5:7854129-7855813 FORWARD LENGTH=1205 Length=1205 Score = 1640 bits (888), Expect = 0.0 Identities = 1078/1167 (92%), Gaps = 24/1167 (2%) Strand=Plus/Plus Query 1 CCGGCGAAGAGTTTCGGAGAGCAAGTTTGGT-TTTTTAGGGGTTTGAGCAGTAGAGTCGG 59 |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| Sbjct 1 CCGGCGAAGAGTTTCGGAGAACAAGTTTGGTCTTTTTAGGGGTTTGAGCAGTGGAGTCGG 60 Query 60 AGAGACCATGTTGTGCGGAGGCTCTCGTGCCTCCGTGCATTTGTTGGACCACCGTCATCC 119 | |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||| Sbjct 61 -TA-ACCATGTTATGCGGAGGCTCTCGCGCCTCCGTGCATTTGTGGGACCATCGTCATCC 118 Query 120 TCCTACGCTCGGTGCTAAGGTCTTGCGGCAATCTTCATTCGTCCTTAGACCTTGTTCGGC 179 ||||| ||||||||||||||| |||||| ||||||| ||| | || |||||||||||||| Sbjct 119 TCCTAGGCTCGGTGCTAAGGTTTTGCGGAAATCTTCGTTCATGCTCAGACCTTGTTCGGC 178 Query 180 TAAATCGCAGCAGCCGATGAAGTCGTCGTCGTATAGGTCTCACTGTAAAA---C------ 230 || ||||||||||| ||| |||||||||| | ||||||||||||||||| | Sbjct 179 TATATCGCAGCAGCGGATAAAGTCGTCGT--T-TAGGTCTCACTGTAAAACTCCAAGAAA 235 Query 231 --T-CCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGA 287 | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 236 AATCCCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGA 295 Query 288 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 355 Query 348 CGGTCATCGAGAGCTTGCAATCCAAGCTGCAAGAACTGGTACTCCATATCTATTGTCGTT 407 ||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 356 CGGTCATCGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTT 415 Query 408 TGTTGGAATGGCTGAAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGA 467 ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 416 TGTTGGATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA 475 Query 468 TAGAAAACGGGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 527 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 CAGAAAACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 535 Query 528 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAGCAGTTTGTCGAGAAGTTGTC 587 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 536 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTC 595 Query 588 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 655 Query 648 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGCGCTTACAT 707 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct 656 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGCGCTTACAT 715 Query 708 CATTAACTCGGTGATGGATAAGAACCAAGTCTCTGGAAACACGGACACAGAGGAGGACTC 767 ||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| Sbjct 716 CATTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAG---GAGGAGGACTC 772 Query 768 AAAGTCAAAAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGG 827 |||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| Sbjct 773 AAAGTCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGG 832 Query 828 AGATGTGAGGTATGTAACTGAGCTCCTCGGCAGACCACACAGGGTTATCTCAAGGGTGAG 887 |||||||||||||||||| |||||||||||||||||||||||||| ||||| || || Sbjct 833 AGATGTGAGGTATGTAACAGAGCTCCTCGGCAGACCACACAGGGTCATCTCTCGGACAAG 892 Query 888 AACACAAGATTTAACAAGCAAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAA 947 ||||||||||||||| |||||| || ||||| || ||||||| ||||| |||||||| || Sbjct 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTCGCTTCAGACATCTTCGCTACTAAA 952 Query 948 TTTACCACCTGGAAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1007 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 TTTACCACCAGGGAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1012 Query 1008 AATTTCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATG 1067 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1013 AATTTCGTGTAAGGTTATTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAACG 1072 Query 1068 TTTCCACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTTAGGGATTGAGTTCGGTTG 1127 ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| Sbjct 1073 TTTCCACAACTCAGATGAGTCTCAAGA-G--TTTCAACTCTTAGGGATTGAGTTCGGTTA 1129 Query 1128 ATTCACACATTGATAATCAAAAGAATA 1154 ||||||||||||||||||||||||||| Sbjct 1130 ATTCACACATTGATAATCAAAAGAATA 1156 > AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily protein | chr5:2683832-2685636 FORWARD LENGTH=1205 Length=1205 Score = 579 bits (313), Expect = 3e-164 Identities = 713/902 (79%), Gaps = 43/902 (5%) Strand=Plus/Plus Query 245 ATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGAAGGGCTT-TCCCCAGTT 303 ||||||||||||| |||| ||| ||| ||||||| ||| ||||||| || || |||| | Sbjct 305 ATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGG-TTATCTCCAG-T 362 Query 304 G-CAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCATCGAGAGCT 362 | ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 363 GTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGCT 422 Query 363 TGCAATCCAAGCTGCAAGAACTGGTA-CTCCATATCTATTGTCGTTTGTTGGAATGGCTG 421 | |||| |||||| |||||| ||| | ||||||||||||| || |||||||||||||| | Sbjct 423 TACAATTCAAGCTTCAAGAATTGG-AGCTCCATATCTATTATCTTTTGTTGGAATGGCCG 481 Query 422 AAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGATAGA-AAACGGGTG 480 | |||||||||||| | || || ||||| ||||| |||||||| ||| || ||| ||||| Sbjct 482 AGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAA-GGGTG 540 Query 481 CTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAGATTGAATT 539 ||| |||||||||| || |||||||| | ||| ||| || | ||||| |||||| ||||| Sbjct 541 CTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCGCCTGAAGAGTATGAGATAGAATT 599 Query 540 TGCCAGCGTTCGACACCTTAACCCAC-AGCAGTTTGTCGAGAAGTTGTCAAGAG-AGCTT 597 ||||||||| ||||| |||| ||||| | |||||||| |||||| |||||| || |||| Sbjct 600 TGCCAGCGTGCGACATCTTACCCCACGA-CAGTTTGTGGAGAAGCTGTCAA-AGGAGCTC 657 Query 598 AGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTCTGGTGAC 657 ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| Sbjct 658 AGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGAT 717 Query 658 GCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGC-GCTTACATCATTAACTC 716 |||||||| || ||||| | || | || | ||||||| | |||| |||||| ||||| Sbjct 718 GCCTCTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCA-CTGCTTGCATCATAAACTC 776 Query 717 GGTGATGGATAAGAACCAAGTCTCTGGAAACACG-GACACAGAGGAGGACTCAAAGTCAA 775 |||||||| | ||| |||| ||| | ||| | | ||| ||| || | ||||||| | Sbjct 777 TGTGATGGACATGAAGCAAGGCTCAGCAAAGA-GAGACTCAG-GG-G-ACTCAAA---A- 828 Query 776 AAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGGAGATGTGA 835 || ||||| |||||||| || ||||| || || || |||||||| || |||||| ||| Sbjct 829 --GATAGAGGGCAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGA 886 Query 836 GGTATGTAACTGAGCTCCTCGGCAGACCACA-CAGGGTTATCTCAAGGGTGAGAACACAA 894 |||| ||| | |||||||| ||||| |||| | | |||||| || || ||||| ||| Sbjct 887 GGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GTCTTATCTTGAGAGTCAGAACCCAA 945 Query 895 GATTTAACAAGC-AAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAATTTACC 953 ||| | |||| |||||| | | ||| | | | | ||| || |||| ||||| || Sbjct 946 GATATGCCAAGTGAAAGGATG-ATC-TCA-G-TCCCGAGATCATCAATACTTAATTTGCC 1001 Query 954 ACCTGGAAAT-GGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CATCCAATT 1011 ||| || | | ||| |||| || ||||| | |||| ||||||||||| || | || | || Sbjct 1002 ACCAGGGA-TCGGAATTTATAAGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTC-AGTT 1059 Query 1012 TCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATGTTTC 1071 |||||| ||| ||||| |||||||| ||| || || ||||||||||||| | | | || Sbjct 1060 CCGTGTACCGTAGTTGTTGATACATCAAATATCCATGTAGAAACAGAGGAGGTACGACTC 1119 Query 1072 CACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTT-AGGGATTGAGTTCGGTTGATT 1130 || | |||| ||||||||||| |||| |||| | || | |||||||||||||| | Sbjct 1120 TGTAATTTAGATTGGTCTCAAGAA---TTTCGACTCGTGAGTG-TTGAGTTCGGTTGAGT 1175 Query 1131 CA 1132 || Sbjct 1176 CA 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58082030565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5