BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489215
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23540.1 | Symbols: | Mov34/MPN/PAD-1 family protein | chr5... 1860 0.0
> AT5G23540.1 | Symbols: | Mov34/MPN/PAD-1 family protein | chr5:7937669-7939575
FORWARD LENGTH=1266
Length=1266
Score = 1860 bits (1007), Expect = 0.0
Identities = 1171/1245 (94%), Gaps = 31/1245 (2%)
Strand=Plus/Plus
Query 1 AAGGTTTT-TTAATAAGATCCCATTGTTGTAGC--AAACCCAGAAGAAGAAACTCTCGAA 57
|||||||| || ||||||||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 18 AAGGTTTTCTT-ATAAGATCCCATTCTTGTAGCAAAAACCCAGAAGAACAAACTTTCGAA 76
Query 58 GAAGACGACTAATTGATTCATCTGATTATGGAGAGATTACAGCGAATCTTCGGAGCTGGT 117
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 77 GAAGACGACTAATCAATTCATCTGATTATGGAGAGACTACAGAGAATCTTCGGAGCTGGT 136
Query 118 GGCGGATTAGGTCACGCATCGCCTGATTCTCCGACTCTCGATACATCGGAGCAGGTCTAC 177
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 137 GGCGGTTTAGGTCACGCATCGCCTGATTCTCCGACTCTCGATACATCGGAGCAGGTTTAC 196
Query 178 ATCTCTTCTCTCGCTCTCCTCAAGATGCTTAAGCACGGGAGAGCTGGTGTTCCTATGGAA 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 197 ATCTCTTCTCTCGCTCTCCTCAAGATGCTTAAGCACGGAAGAGCTGGTGTTCCTATGGAA 256
Query 238 GTCATGGGATTGATGCTTGGAGAGTTTGTGGATGAGTACACTGTTAGAGTTGTGGATGTT 297
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 257 GTCATGGGATTGATGCTTGGAGAGTTTGTGGATGAATACACTGTTAGGGTTGTGGATGTT 316
Query 298 TTTGCGATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTCCAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTTGCGATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTCCAG 376
Query 358 ACTAATATGCTCGACATGCTTAAGCAGACTGGAAGACCTGAAATGGTTGTTGGTTGGTAT 417
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct 377 ACTAATATGCTCGACATGCTTAAACAGACCGGAAGACCTGAGATGGTGGTTGGTTGGTAT 436
Query 418 CATTCACATCCTGGATTTGGCTGCTGGCTTTCTGGGGTTGACATTAATACCCAACAGAGT 477
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 437 CATTCACATCCTGGATTCGGCTGCTGGCTTTCTGGGGTTGACATTAATACTCAACAGAGT 496
Query 478 TTTGAAGCTTTGAACCAGCGAGCTGTAGCAGTGGTGGTAGATCCGATTCAGAGTGTGAAG 537
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTTGAAGCTTTGAATCAGCGAGCTGTAGCAGTGGTGGTAGATCCGATTCAGAGTGTGAAA 556
Query 538 GGAAAGGTGGTGATTGATGCGTTCCGCTCCATAAATCCACAGACCATTATGCTTGGGCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGAAAGGTGGTGATTGATGCGTTCCGCTCCATAAATCCACAGACCATTATGCTTGGGCAG 616
Query 598 GAACCCCGTCAAACCACATCGAACCTTGGGCACCTAAACAAACCATCGATCCAGGCCTTG 657
|||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 617 GAACCCCGTCAAACAACATCGAACCTTGGGCACTTGAACAAACCATCGATCCAGGCTTTG 676
Query 658 ATTCATGGGTTGAACAGACACTATTACTCAATAGCAATCAACTACAGGAAGAACGAGCTT 717
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 677 ATTCACGGGTTGAACAGACACTATTACTCAATAGCAATCAACTATAGGAAGAACGAGCTT 736
Query 718 GAGGAGAAGATGTTACTGAACCTCCATAAGAAGAAATGGACAGATGGTCTGACGCTAAGA 777
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 737 GAGGAGAAGATGTTACTCAACCTCCACAAGAAGAAATGGACAGATGGTCTGACGCTAAGA 796
Query 778 CCCTTTGACACCCACTCCAAGACAAATGAACAGACGGTCCAGGAGATGTTGAGCTTGGCT 837
| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 797 CGCTTTGACACCCACTCCAAGACCAACGAACAGACGGTCCAGGAGATGTTGAGCTTGGCT 856
Query 838 GCTAAATATAACAAGGCGGTTCAAGAGGAGGACGAGTTGTCACCAGAGAAGCTGGCAATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GCTAAATATAACAAGGCGGTTCAAGAGGAGGACGAGTTGTCACCAGAGAAGCTGGCAATT 916
Query 898 GTGAATGTGGGAAGACAAGACGCAAAGAAGCATCTGGAAGAACATGTTTCCAACCTCATG 957
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 917 GTGAATGTGGGAAGACAAGATGCAAAGAAGCATCTGGAAGAACATGTCTCGAACCTCATG 976
Query 958 TCATCCAACATTGTTCAGACACTAGGCACTATGCTCGACACTGTTGTCTTCTAGAGAGCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TCATCCAACATTGTTCAGACACTAGGCACTATGCTCGACACTGTTGTCTTCTAGAGAGCT 1036
Query 1018 TACTTCTCCAGC-GCTTCAAATCATTGAGCTTTGTTCTTCTGCATCTCCTTGGTTTCTTT 1076
|||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1037 TACTTCTCCAGCCGCTTCAAGTCATTGAGCTTTGTTCTTCTGCATCTCTTTGG---CTT- 1092
Query 1077 CTACTGAATGTTCTCTTTTTATCCCTTATCAACTAGGCATTTTACAAGGTTGTATTGTAC 1136
||||||||||||||||||||||| | | ||| | ||||||||||||||| |||||
Sbjct 1093 CTACTGAATGTTCTCTTTTTATC--TG--C---TAG-CTTTTTACAAGGTTGTACTGTAC 1144
Query 1137 TATGTGATTTCGTTCGTTTAAGGCCATGGATTGATTTATATTTCTTTGCAT-T-AT---- 1190
|||||||||||||||||| |||| || |||| ||||| ||||||||||||| | ||
Sbjct 1145 TATGTGATTTCGTTCGTT-AAGGGCAGGGATCGATTTCTATTTCTTTGCATATTATTTTC 1203
Query 1191 A--TTTT-----CCTCCCATTTTTAGATTTTATGCTGCAACTTTC 1228
| |||| |||||||||||||||||||||||||||||||||
Sbjct 1204 AGATTTTATTTTCCTCCCATTTTTAGATTTTATGCTGCAACTTTC 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5