BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489237 Length=977 Score E Sequences producing significant alignments: (Bits) Value AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806... 1118 0.0 AT3G48940.1 | Symbols: | Remorin family protein | chr3:1814286... 383 2e-105 > AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806-8011619 REVERSE LENGTH=973 Length=973 Score = 1118 bits (605), Expect = 0.0 Identities = 890/1013 (88%), Gaps = 78/1013 (8%) Strand=Plus/Plus Query 1 AACGAGAAACAGAACATCATCACTACCAAACATTTTCCAGCTCAGTTTCTTGAACAT-AC 59 |||||||||||| | | ||||||||||||||| | |||||||||||||||| || || | Sbjct 1 AACGAGAAACAG-A-A-CATCACTACCAAACA-TCTCCAGCTCAGTTTCTTCAA-ATAAA 55 Query 60 AGCAGTTAATCTCTCTAGAACAAtttttt-ttGTT-TC-CTCTC-----T---C------ 102 | ||||||||||||||| ||||||||||| || || || ||||| | | Sbjct 56 AACAGTTAATCTCTCTAAAACAATTTTTTGTT-TTCTCTCTCTCTTAAATAACCAGAGAG 114 Query 103 TT-A-AAT-A-----A--C-CATTGTAACCTTTAGTTGTTGTACCTGACGTTATGGCTGA 151 || | ||| | | | | |||||| ||||||||||||||||| || | |||||||| Sbjct 115 TTCAGAATCATTTTGATTCTCTTTGTAATCTTTAGTTGTTGTACCTAACATCATGGCTGA 174 Query 152 AGAGGAACCAAAGAAGGTGACAGAGACCGTGTCAGAACCAACTCCAACACCGGAAGTTCC 211 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 175 AGAGGAACCGAAGAAGGTGACAGAGACCGTGTCGGAACCAACTCCAACACCGGAAGTTCC 234 Query 212 GGTTGAGAAACCTGTTGCTGCGGCAGATGTTACTCCTCAGGAGAAACCTGTTGTTGCTCC 271 ||| |||||||| |||| || || || | || | ||||||||| Sbjct 235 GGTGGAGAAACC---TGCT---GC---TG------CT--GCAG--A-----TGTTGCTCC 270 Query 272 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCGCCGGCGGAGGAGAA 331 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 271 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCACCGGCAGAGGAGAA 330 Query 332 GCTAGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCTAAGGAAGTAGAGGAAGAGAAGAA 391 || ||||||||| |||||| |||||||||| ||| |||| |||||||||||||||||||| Sbjct 331 GCAAGAAGACTCTAAGGCTATTGTTCCCGTCGTCCCTAAAGAAGTAGAGGAAGAGAAGAA 390 Query 392 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 450 Query 452 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 510 Query 512 GCTTTCTTCAATTGGGTCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 571 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 GCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 570 Query 572 GAAAATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTGGAGCTGATGAAGAACAA 631 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 571 GAAAATGGAGGAGCAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAGAACAA 630 Query 632 AATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATGATCGAAGCTAAGCGTGG 691 |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 631 AATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGATGATTGAAGCTAAGCGTGG 690 Query 692 AGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGTGCCACTGGAACCGCTCC 751 ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 691 AGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACCGTGCCACTGGAACCGCTCC 750 Query 752 CAAAAAGCTTTTTGGATGCATATGATCT--AATCATCTCGAATGGG-AAACACATGAA-T 807 |||||||||||| |||||||| |||||| ||||||||||| |||| ||||| ||||| | Sbjct 751 CAAAAAGCTTTTCGGATGCATGTGATCTCTAATCATCTCGA-TGGGGAAACAAATGAAAT 809 Query 808 ATGGTGTT-GATGTAATGACGTT-TTTAGTTTGCTAAATATGGGTTTAATTTGGCAACAT 865 ||||| || |||||||||||||| ||||||||||| ||| |||||||||| ||||||||| Sbjct 810 ATGGTATTTGATGTAATGACGTTCTTTAGTTTGCTTAATGTGGGTTTAATATGGCAACAT 869 Query 866 AGAATA-TTATAAGGTCATATGCAAACATTACATATTGATTGGGATGCGTTTGTTTATTT 924 |||| | ||||||||||| | || | ||| ||||||||||| |||||||||| |||| Sbjct 870 AGAA-AGTTATAAGGTCA-A--CAT-C-TTA--TATTGATTGGGCTGCGTTTGTTAATTT 921 Query 925 AATATTGTATTTGTACAACTCTTTTCATTGAAAGtttttttCTTAGCTTTATG 977 || ||||||||||||| ||||||||||||||| ||| ||||||||||||| Sbjct 922 GAT-TTGTATTTGTACA--TCTTTTCATTGAAAGGCTTTCTCTTAGCTTTATG 971 > AT3G48940.1 | Symbols: | Remorin family protein | chr3:18142863-18144163 REVERSE LENGTH=528 Length=528 Score = 383 bits (207), Expect = 2e-105 Identities = 375/455 (82%), Gaps = 15/455 (3%) Strand=Plus/Plus Query 323 GGAGGAGAAGCT-AGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCT---AAGGAA-GTA 377 |||||||||| | || || || || ||| |||||| ||| |||||| || ||| || Sbjct 72 GGAGGAGAAG-TCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCTA 130 Query 378 GAGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGAC- 436 |||||| ||||||| ||| |||||| | |||||||||||| ||| |||| | ||| | Sbjct 131 -CGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTCGAG-CA 188 Query 437 AGAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAA 496 ||| |||||||| || || |||||||||||||||||||||||||||| |||||||||||| Sbjct 189 AGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAA 248 Query 497 CAAAGCTGAGAAGAAGCTTTCTTCAATTGG-GTCATGGGAGAACAACAAGAAAGCAGCTG 555 ||||||| |||||||| |||||||| |||| | | ||||| |||| ||||||||| ||| Sbjct 249 CAAAGCTCAGAAGAAGATTTCTTCAGTTGGAG-CTTGGGAAAACAGCAAGAAAGCTTCTG 307 Query 556 TGGAAGCTGAGCTCAAGAAA-ATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTG 614 ||||||||||||| || ||| || |||||||| | | |||||||| ||| | || Sbjct 308 TGGAAGCTGAGCTAAA-AAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACACTACACA 366 Query 615 GAGCTGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATG 674 |||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||| Sbjct 367 GAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAGAGCGATG 426 Query 675 ATCGAAGCTAAGCGTGGAGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGT 734 | ||||||||| || |||||||| |||||||||||||| ||| | ||||| ||||||||| Sbjct 427 ACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACCGT 486 Query 735 GCCACTGGAACCGCTCCCAAA-AAGCTTTTTGGAT 768 ||||| ||||| ||||| || ||||| ||||||| Sbjct 487 GCCACCGGAACTGCTCC-AACCAAGCTATTTGGAT 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47822907944 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5