BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489268
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24110.1 | Symbols: WRKY30, ATWRKY30 | WRKY DNA-binding prot... 1615 0.0
> AT5G24110.1 | Symbols: WRKY30, ATWRKY30 | WRKY DNA-binding protein
30 | chr5:8153115-8154709 REVERSE LENGTH=1289
Length=1289
Score = 1615 bits (874), Expect = 0.0
Identities = 1027/1098 (94%), Gaps = 21/1098 (2%)
Strand=Plus/Plus
Query 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTATTTTACACCACTTTAATCTTATTC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTA-TTTACACCACTTTAATCTTATTC 59
Query 61 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 119
Query 121 AGGAGATCAACGAGCTAATGACT-GAAGGAAGAGACTATGCACACCAGTTTGGATCGGCT 179
| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 120 ACGAGATCAACGAGCTAATGA-TAGAAGGAAGAGACTATGCACACCAGTTTGGATCAGCT 178
Query 180 TCATCTCAAGAAACACGTGAACATTTGGCCAAGAAGATTCTTGAATCTTACCACAAGTCT 239
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 179 TCATCTCAAGAAACACGTGAACATTTAGCCAAAAAGATTCTTCAATCTTACCACAAGTCT 238
Query 240 CTAACCATCATGAACTACTCCGGCGAACTCGACCAAGTTTCTCACGGTGGAGGAAGCCCC 299
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 239 CTCACCATCATGAACTACTCCGGCGAACTTGACCAAGTTTCTCAGGGTGGAGGAAGCCCC 298
Query 300 AAGAGCGATGATTCCGATCAAGAACCACTTCATGTCATCAAGAGTTCCAAGAAGTCAATG 359
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 299 AAGAGCGATGATTCCGATCAAGAACCACTT---GTCATCAAGAGTTCGAAGAAGTCAATG 355
Query 360 CCAAGGTGGACTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTATTGATAGAACGCTGGAC 419
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 CCAAGGTGGAGTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTGTTGATAGAACGCTGGAC 415
Query 420 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATCCTCGGAGCCAAATTTCCAAGA 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 416 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATTCTCGGAGCCAAATTTCCAAGA 475
Query 480 GGATACTATCGATGCACGTATAGAAAATCTCAAGGATGTGAAGCCACCAAACAAGTCCAA 539
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 476 GGATACTATAGATGCACGTATAGAAAGTCTCAAGGATGTGAAGCCACTAAACAAGTCCAA 535
Query 540 AGATCTGACGAAAATCAGATGCTCTTTGAGATCAGTTACCGAGGAATACATTCTTGCTCC 599
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 AGATCTGATGAAAATCAGATGCTCCTTGAGATCAGTTACCGAGGAATACATTCTTGCTCT 595
Query 600 CAAGCTGCAAATGTCCGTTCAAACA-TCCCGGTACAATATCTCGAACCGAACCAGACTCA 658
||||||||||||||| || ||| || | ||| ||||| | ||||||||||||||||| ||
Sbjct 596 CAAGCTGCAAATGTCGGTACAA-CAATGCCGATACAAAACCTCGAACCGAACCAGACCCA 654
Query 659 AGAACACGAAAATCTTGACATCGTGAAGGAAAGTCTAGACAACTACAATCACCAAGCACA 718
|||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 655 AGAACACGGAAATCTTGACATGGTAAAGGAAAGTGTAGACAACTACAATCACCAAGCACA 714
Query 719 TTTGCATGACAATTTTCACTATCCATTGTGC-TCTACCCCAAATCTAGAGAATAACAATG 777
||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 715 TTTGCATCACAACCTTCACTATCCATTGT-CATCTACCCCAAATCTAGAGAATAACAATG 773
Query 778 CGTATATGCTTCAACTGAGAGATCACAACA-CTGAGTTTTTTGGATCTACAAGTTTCTCT 836
| |||||||||||| || ||||||| |||| | || | |||||||||||| || ||||||
Sbjct 774 CCTATATGCTTCAAATGCGAGATCAAAACATC-GAATATTTTGGATCTACGAGCTTCTCT 832
Query 837 AGTGATCTAAGAACTAATATCAACTACAATTTTCCGGCATCTGGCTCGGCTTCTCACTCT 896
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 833 AGTGATCTAGGAACTAGTATCAACTACAATTTTCCAGCATCTGGCTCGGCTTCTCACTC- 891
Query 897 A-CATCAAACTCTCCGTCCACCGTTCCTTTGGAATCCCCATTTGAAAGCTATGATCCAAA 955
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 892 AGCATCAAACTCTCCGTCCACCGTCCCTTTGGAATCCCCGTTTGAAAGCTATGATCCAAA 951
Query 956 TCATCCATATGGAGGGTTTGGTGGGTTCTATTCTTAGT-ATCCACTTAAGGGAGGGACGG 1014
||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 952 TCATCCATATGGAGGATTTGGTGGGTTCTATTCTTAGTTATCTACTTAAGGGAGGGACGG 1011
Query 1015 AACTTTT-ACATGATCTCTTGATTAAAGAGAGATATAGTTTTTCATAATAGCTAATCAAT 1073
||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1012 AACTTTTTACATGACCTCTTGATTAAAGAGAGA----GTTTT-CATAATAGCTAATCAAT 1066
Query 1074 TTCCAATTCAAATTTCCG 1091
|||| |||||||| ||||
Sbjct 1067 TTCCTATTCAAATATCCG 1084
Score = 219 bits (118), Expect = 7e-56
Identities = 152/167 (91%), Gaps = 7/167 (4%)
Strand=Plus/Plus
Query 1091 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTACGTATGATCCTTGTT 1150
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1129 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTAGGTATGATCCTTGTT 1188
Query 1151 ATCTAGCTTATAGTCCATGGttttttactttttACCATATGTTGTTGTAACATATTTGAA 1210
||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||
Sbjct 1189 ATCTAGCTTATAGTCCATGGTTTTT-ACTTTTTGCCTTATGTTGTTGTAACACATTCGAG 1247
Query 1211 T-CTTTCTATTGCAAATTTGAGTCTAGCTTCTTTTAGCTATACTATT 1256
| ||| |||||||||||||||||| | ||||||||||||| |||
Sbjct 1248 TTCTTA-TATTGCAAATTTGAGTCT---T-CTTTTAGCTATACAATT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5