BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489269 Length=1860 Score E Sequences producing significant alignments: (Bits) Value AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | ch... 2809 0.0 > AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr5:8157551-8160229 REVERSE LENGTH=1904 Length=1904 Score = 2809 bits (1521), Expect = 0.0 Identities = 1754/1865 (94%), Gaps = 21/1865 (1%) Strand=Plus/Plus Query 1 CACAAGTGAGCTAGCTTTTCGAAAGATTCAATTTTTCAGCCTT-AGATTGTGATGGGAGT 59 |||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| Sbjct 56 CACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGT 115 Query 60 TGTGTTTATTTCAAGTTCAGCTGCAAGATCTCCGCTTGGGTTAAGCAGCGATCTTTTGAC 119 ||||| ||||||||||||||||||||||||||| || ||||| ||| |||||||||||| Sbjct 116 TGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGAC 175 Query 120 ACATCGGTCTTCGCTTAAGAAGCCATCCATTGTTGCGTTTAAAGCCGATGATTCGAGCAA 179 |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 176 ACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAA 235 Query 180 TTCAGCTATGATCATTCCTCCTCGAGAACAAGTTTTGATTCCTGCCGAAAAGCATAATGA 239 ||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 236 TTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGA 295 Query 240 GAAGAAGAGAGTAGTAACGAGGAGGAAGCCGTGTAAAACTCCGAAAAAACCGAGTTCTTT 299 ||||||||||| |||||||||||| ||||| |||||||| |||||||||||| ||| || Sbjct 296 GAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTT 355 Query 300 GGAACACAATTCGGCTCCTTCGTGTTCATTAGGAGTTGATTACTATGAAGCTGCTGCTAG 359 |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||| || Sbjct 356 GGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAG 415 Query 360 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAAGAGGATGTTGA 419 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 416 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGA 475 Query 420 AGATGGCGGTTCCAAAACGAAAGTTTCACCGAGGAGAAAAAGGAAACAGAGTGGTGAGGA 479 ||||||||| || ||| | |||||||||| |||||||||||||||| | ||||||||||| Sbjct 476 AGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAGAAAAAGGAAAGAAAGTGGTGAGGA 535 Query 480 GAAGAAAGTTGTTGTGAGGAATAATGTGAAGAAGGAAAAGCGTTTGAGTCTTGATAAACG 539 ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 536 GAAGAAAGTGGTTGTGAGGAATAATGTGAAGAAGGAAAAACGTATGAGTCTTGATAAACG 595 Query 540 GATCGCTTTGAAGAGAAACGTTCAGGACAAACCAGTTGTTGTTTCTGCTGAGAAGAAAGT 599 ||| |||||||||||||||||||| || |||||||| |||| ||||| ||| |||||||| Sbjct 596 GATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGT 655 Query 600 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 715 Query 660 TAATGATATTGTGAGCTTGGACTGGaaaaaaaTGAAGATACCTCCTGTTCTTTCTTCCAC 719 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 716 TAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTAC 775 Query 720 TGAACATGCTTGGTTGTTTAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTAAAAGA 779 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 776 TGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGA 835 Query 780 TGAATTGCATAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGAGGAGATCAA 839 || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 836 TGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAA 895 Query 840 TATGACCGCAGGTGAAGTAAAAAAGAAGATCGAAATAGGTAGAGCTGCAAGAAACAAACT 899 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 896 TATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACT 955 Query 900 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATATTTTCATGATTTTAC 959 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 956 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTAC 1015 Query 960 CAACGGACCGAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1019 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1075 Query 1020 TGACCGCTTTGAGCCAAAAAGGAAGTTCCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1079 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1076 TGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1135 Query 1080 ACATGCCATCATAAGGTCAATGACAACTTCAAATTTCACTCGTGTCCCATTTGGACTTGA 1139 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1136 ACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGA 1195 Query 1140 ATCGGTTAGAGTGGAGAT-TTTCAAAACAAAGACTGAGCTATTGTTTGAGCTGGGAAGAC 1198 |||||||||||||||||| | | ||| ||||||||||||||| ||||||| ||||||||| Sbjct 1196 ATCGGTTAGAGTGGAGATATAT-AAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGAC 1254 Query 1199 TTCCAACCGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1258 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 CTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1314 Query 1259 TATTGAGGGCTGCAAAACCCGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1318 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1315 TATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1374 Query 1319 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1434 Query 1379 CTCTTCTCAGGCTCGCTCTCGACGACGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1438 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1435 CTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1494 Query 1439 TTATTCGACAGAGATACGGTCTTGATGGGAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1498 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1495 TTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1554 Query 1499 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1614 Query 1559 TTAAGCATCAGGCTC-GAGTTGATTACCTTCGTCAATACATCGTCTGAAACCAAACCGAG 1617 ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1615 TTAAGCATCAGGC-CAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAA 1673 Query 1618 CCGAATTGAGC-GCCTCACTCAAGCATTTGTGCATACTTGGTATGATTTCTTGAATTTAC 1676 ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 1674 CCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGTATGATTTCCCGACTTTAC 1733 Query 1677 GAGATACTTCAAACCCTCTTATAACCGTTGTATAGTTGTGTATGTAAGTAATATCAGAGT 1736 ||||||||||| ||||||||||||||||||||||||||||||||||| || | |||| Sbjct 1734 GAGATACTTCACACCCTCTTATAACCGTTGTATAGTTGTGTATGTAA-TAG---CGGAGT 1789 Query 1737 TACTTATAGCTGCGTTAAATCGAGCAGTGAATCAAAATCGTTGTATTATATCATTACTAT 1796 ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1790 TACTTATAGCTGCGTTAAATCGATCAGTGAATCGCAATCGTTGTATTATATCATTA---- 1845 Query 1797 ACAGTCTATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGACATTGT-ATGCATTA 1855 || |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 1846 ---GT--ATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGATAT-GTTATGCATTA 1899 Query 1856 TTTTC 1860 | ||| Sbjct 1900 TCTTC 1904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92067799530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5