BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489289 Length=2364 Score E Sequences producing significant alignments: (Bits) Value AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synth... 3526 0.0 > AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266798-8271196 FORWARD LENGTH=2431 Length=2431 Score = 3526 bits (1909), Expect = 0.0 Identities = 2137/2247 (95%), Gaps = 15/2247 (1%) Strand=Plus/Plus Query 1 AGCATGTCGGCGAAGTTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACCGGTGGTTTC 60 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 AGCATGTCGGCGAAGCTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACAGGTGGTTTC 60 Query 61 AATCTTCCCCAACAACCAGACGAAATCCAACATATATCTGTAACAATCGAAGAAACCCTC 120 ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||| Sbjct 61 AATCTTCCCCAACAACCAGACGAAATCAAACATAAATCTGTAACAGTCGAAGAAACTCTC 120 Query 121 ACTCTTCAATCCATCAATGGCGTCTCTTCAGATCAGTGGCTCCGTTAAATTCGAGCCGCT 180 |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 121 ACTCTTTAATTGATCAATGGCGTCTCTTCAAATCAGTGGCTCCGTTAAATTCGAGCCGTT 180 Query 181 CGTTGGATTCAACCGGATCCGCTATTTTCGTCCGATCGGCAGTCTCGGATTCCCTCGTTT 240 |||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||| Sbjct 181 CGTTGGATTCAACCGGATCCGCCATTTCCGTCCGATCGCCAGTCTCGGATTTCCTCGTTT 240 Query 241 TCGCCGGAGATTCAGTATCGGAC-GTCCATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299 ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 241 TCGACGGAGATTCAGTATCGGACGGT-CATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299 Query 300 GCGGTAAAATCGGTGAGTCTGATGGTGATGAAAAAGGATTTATCACTGACGCAGAGAGAG 359 | | | || |||||||||| ||| | | | |||||||||| ||||||||||||| Sbjct 300 G-TG-ACTCTC-GTGAGTCTGA---TGA--AGAGA-GATTTATCACAGACGCAGAGAGAG 350 Query 360 ATGGTTCTGGCTCCGTTCTCGGATTTCAGCTCACTCCTCCTGGTGATCAAGAAATC-TTT 418 ||||||||||||||||||| || ||||||||||||||||||||||||||| ||| | || Sbjct 351 ATGGTTCTGGCTCCGTTCTTGGCTTTCAGCTCACTCCTCCTGGTGATCAACAAA-CAGTT 409 Query 419 AGCACTAGCACAGGAGAAATTACTCATCAAGAAGAGAAGAAAGAGGCTATTGATGAAACA 478 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| Sbjct 410 AGCACTAGCACAGGAGAAATTACACATCATGAAGAGAAGAAAGAGGCTATTGATCAAATT 469 Query 479 GTAATGGCTGATTTTGGTGTACCTGGAAATAGAGCAGTTGAAGAAGGAGCTGTAGAGGTT 538 ||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||| Sbjct 470 GTAATGGCTGACTTTGGCGTACCTGGAAATAGAGCTGTTGAAGAAGGAGCTGCAGAGGTT 529 Query 539 GGAATTCCGAGTGGGAAAGCTGAAGTTGTTAATAACCTTGTTTTCGTTACATCCGAGGCT 598 || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 530 GGGATTCCGAGTGGAAAAGCTGAAGTTGTCAATAACCTTGTTTTCGTTACATCCGAGGCG 589 Query 599 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCAATAGCTTTG 658 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 590 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCGATAGCTTTA 649 Query 659 GCAGGACGTGGGCACCGTGTTATGGTCGTTTCTCCTCGGTACCTCAATGGAACCGCTGCA 718 || || |||||||| |||||||||||| |||||||||||||| | |||||||| |||||| Sbjct 650 GCTGGTCGTGGGCATCGTGTTATGGTCATTTCTCCTCGGTACTTAAATGGAACTGCTGCA 709 Query 719 GACAATAACTATGCTCGGGCTAAGGATTTGGGAATACGTATCACAGTAAATTGCTTTGGT 778 ||||| |||||||| ||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 710 GACAAGAACTATGCCCGGGCTAAGGATTTGGGGATACGTGTAACAGTAAATTGCTTTGGT 769 Query 779 GGTTCTCAAGAAGTTTCCTTCTATCATGAATATAGAGATGGTGTTGATTGGGTTTTTGTT 838 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 770 GGTTCTCAAGAAGTTTCCTTCTATCATGAGTATAGAGATGGTGTTGATTGGGTTTTTGTT 829 Query 839 GATCACAAATCCTACCATAGACCTGGTAATCCGTACGGAGATAGTAAAGGAGCCTTTGGT 898 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 830 GATCACAAATCCTACCATAGACCTGGTAATCCCTACGGAGATAGTAAAGGAGCCTTTGGT 889 Query 899 GATAATCAGTTTCGGTTCACGTTACTTTGCCATGCCGCATGTGAAGCCCCTCTTGTGCTG 958 || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 890 GACAATCAGTTTCGGTTCACGTTACTTTGCCATGCTGCATGTGAAGCCCCTCTCGTGCTG 949 Query 959 CCTCTTGGAGGGTTCACTTACGGAGAGAAATCTCTCTTCCTTGTCAATGACTGGCATGCC 1018 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 950 CCTCTTGGAGGGTTCACTTATGGAGAGAAATCACTCTTCCTTGTCAATGACTGGCATGCC 1009 Query 1019 AGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATACGGAGTTTATAAGGATGCA 1078 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1010 GGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATATGGAGTTTATAAGGATGCA 1069 Query 1079 AGAAGCATTCTCATTATACATAACCTCGCCCATCAGGGAGTGGAGCCAGCAGCTACATAC 1138 ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1070 AGAAGCATTCTCATTATCCATAACCTCGCTCATCAGGGGGTGGAGCCAGCAGCTACATAC 1129 Query 1139 ACCAACTTGGGATTGCCTTCGGAGTGGTATGGAGCTGTCGGGTGGGTATTTCCAACGTGG 1198 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1130 ACCAACTTGGGATTGCCTTCGGAATGGTATGGAGCAGTCGGGTGGGTATTTCCAACGTGG 1189 Query 1199 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1249 Query 1259 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTCGAA 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1250 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTTGAA 1309 Query 1319 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACG 1378 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACA 1369 Query 1379 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1429 Query 1439 TCTGCTGATGATTTCTCCGAGAAGGTCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1498 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1430 TCTGCTGATGATGTCTCCGAGAAGATCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1489 Query 1499 CTCCCCATTAGGCCTGAATGTCCTATGATTGGGTTTATAGGAAGACTTGATTACCAGAAG 1558 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1490 CTCCCCATTAGGCCTGAATGTCCTATGATTGGTTTTATAGGAAGACTTGATTACCAGAAG 1549 Query 1559 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1609 Query 1619 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1669 Query 1679 AGAGACAAATTCCGCGGTTGGGTTGGGTTCAATGTTCCCATCTCTCATCGAATCACAGCC 1738 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1670 AGAGACAAATTCCGTGGTTGGGTTGGGTTCAATGTCCCCATCTCTCATCGAATCACAGCC 1729 Query 1739 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGCGGTTTAAATCAGTTATAC 1798 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1730 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGTGGTTTAAATCAGCTATAC 1789 Query 1799 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACAGGAGGGCTCAGAGATACGGTT 1858 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1790 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACTGGAGGACTCAGAGATACGGTT 1849 Query 1859 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTGCTGGTACAGGGTGGGTCTTCACT 1918 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1850 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTACTGGTACAGGGTGGGTCTTCACT 1909 Query 1919 CCCTTGTCGAAAGATAGCATGGTGTCGGCCTTGAGGTTGGCTGCTGCAACGTACAGAGAG 1978 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1910 CCCTTGTCGAAAGATAGCATGGTCTCGGCCTTGAGGTTGGCTGCAGCAACGTACAGAGAG 1969 Query 1979 TATAAAGAGTCATGGGAAGGATTGATGAGAAGAGGAATGACACGAAACTATTCTTGGGAA 2038 |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1970 TATAAACAGTCATGGGAAGGATTGATGAGAAGAGGAATGACCCGAAACTACTCTTGGGAA 2029 Query 2039 AACGCTGCCGTTCAGTATGAGCAAGTTTTCCAATGGGTTTTCATGGACCCTCCCTACGTC 2098 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 2030 AACGCTGCCGTTCAGTATGAGCAAGTTTTTCAGTGGGTTTTCATGGACCCTCCCTATGTC 2089 Query 2099 AGCTAGACCAAACACAAACCGAATCAAACCGAGTTGGACCGGACCAGACCAGACCTGACC 2158 |||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||||| Sbjct 2090 AGCTAGACCAAACATAAACTGAACCAAACCGAGTTGGACCGGATCAGACCAGACCTGACC 2149 Query 2159 AATCAGATGGAGAATGTGGAACCTCCTCTTCCGGTTATCGAAAATCTATGGTTTTCAACG 2218 ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 2150 AATCAGATGGAGAGTGTGGAACCTCCTTTTCCGGCTATCGAAAATCTATGGTTTTCAACG 2209 Query 2219 TTTCCACACATTAAACCGTGTATCTAT 2245 |||||||| ||||||||||||||||| Sbjct 2210 TTTCCACA--TTAAACCGTGTATCTAT 2234 Score = 54.7 bits (29), Expect = 4e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 2336 TGATAAGACATTATACGAGTAGACTAATA 2364 ||||||||||||||||||||||||||||| Sbjct 2381 TGATAAGACATTATACGAGTAGACTAATA 2409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117368874210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5