BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489293 Length=545 Score E Sequences producing significant alignments: (Bits) Value AT5G24314.2 | Symbols: PTAC7 | plastid transcriptionally active... 699 0.0 > AT5G24314.2 | Symbols: PTAC7 | plastid transcriptionally active7 | chr5:8277700-8279194 FORWARD LENGTH=655 Length=655 Score = 699 bits (378), Expect = 0.0 Identities = 484/531 (91%), Gaps = 24/531 (5%) Strand=Plus/Plus Query 1 GTGTAGCCATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTGCTGATA 60 ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 43 GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTATTGATA 102 Query 61 CAAGAAGCGGGAATTTGCGCTGCACATTTCACTCTCAGGTTTCTTGTGGGATTCAGAGAG 120 | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 103 CGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGGTTTCTTGTGGGATTCAGAGAG 162 Query 121 ATGATAATGGACGCCGTGTTTGGCGGA-G-G---A---G---G------AC-----A--T 156 ||||||||||||||||||||||||||| | | | | | || | | Sbjct 163 ATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTGGTAAGTACTAAACTTGATATTT 222 Query 157 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAGGAAC 216 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 223 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAAGAAC 282 Query 217 AAGTAAGGAAGATAAGAGAAGTTGGGAAAGTAATGACAATGGACATAGAGCAGCTGCTTT 276 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 283 AAGTAAGGAAGATAAGAGAAGTTGGGAAGGTAATGACAATGGACATAGAGCAGCTTCTTT 342 Query 277 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGTGTAGCAGCTGAAGCAACAGAGTACG 336 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 343 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGCGTAGCAGCTGAAGCAACAGAGTACG 402 Query 337 TGGaaaaaaaCAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTGAGCA 396 |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 403 TGGACAAGAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTAAGCA 462 Query 397 ACCGCGTGAACGATCTCGGGTTTGATCGCCCTGAGGCTTATATAGAAGCTGATCCTTACA 456 |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 463 ACCGTGTGAACGATCTCGGCTTTGATCGCCCTGAGGCTTATGTAGAAGCTGATCCTTACA 522 Query 457 AGCCCGGTCCTGGCTATTTGTTGGAGTATTACACATGAGATATTATTACAA 507 | |||||||||||||||||||||||||| ||||| ||| ||||||| |||| Sbjct 523 AACCCGGTCCTGGCTATTTGTTGGAGTACTACACTTGATATATTATAACAA 573 Score = 65.8 bits (35), Expect = 4e-10 Identities = 38/39 (97%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 508 TTGTATTACC-AAACCAAATCAATGCATTCACAGCTTTG 545 |||||||||| |||||||||||||||||||||||||||| Sbjct 605 TTGTATTACCAAAACCAAATCAATGCATTCACAGCTTTG 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26121756440 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5