BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489310 Length=1095 Score E Sequences producing significant alignments: (Bits) Value AT5G24460.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1321 0.0 > AT5G24460.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8354699-8355874 FORWARD LENGTH=1176 Length=1176 Score = 1321 bits (715), Expect = 0.0 Identities = 869/940 (92%), Gaps = 24/940 (3%) Strand=Plus/Plus Query 52 CGATTCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 111 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 CGA-TCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 145 Query 112 ACCACTCGTTAACCGCCGT-A-A-CAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 168 ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 146 ACCACTCGTTAACCGCCGTAACATCAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 205 Query 169 CGCTCTACCTGATCTATTT-CTCGCGGCGGTttctcttctcttcctctggtcatctccta 227 |||| |||||||| | ||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 206 CGCTTTACCTGATAT-TTTCCTCGCGGCGGTCTCTCTCCTTTTCCTCTGGTCATCTCCTA 264 Query 228 aacctctactctctcttcctccaaacagattctcttTCCCTCTAAATCCTCGCCGTCGA- 286 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 265 AACCTCTAGTCTCTCTTCCTCCGAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGAT 324 Query 287 --ATCCCCGCCATGTCTCGCCGA--T-CTCCTCCTCCTCCT--T-CTCAACGCTTCGCGA 338 ||| ||||||||||||||||| | |||||||||||||| | ||||||||||||| | Sbjct 325 CCATCACCGCCATGTCTCGCCGATCTCCTCCTCCTCCTCCTCCTACTCAACGCTTCGCTA 384 Query 339 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGGTTACCTTCCGATTCATTCGCCGCTT 398 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 385 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGATTACCTTCCGATTCATTCGCCGCTT 444 Query 399 GGGGAGTCAAACCGGGAACTAAAAACGTTCATAACCTCTGGCTTGAACTCTCCGACGGCG 458 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 445 GGGGAGTCAAACCGGGAACCAAAAACGTTCATAACCTCTGGCTAGAACTCTCCGACGGCG 504 Query 459 AAACTTCTCTCGCCGATTCAACTCCTCCGGTTCGCACCGTCAACGTCGTCACCGTTCGAG 518 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 505 AAACTTCTCTCGCCGATTCAACTCCTCCAGTACGCACCGTCAACGTCGTCACCGTTCGAG 564 Query 519 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 565 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 624 Query 579 TTAGAGAGAGATTTCGTCCGTTATCGGAGAAGATGAAGCCTGAAGAATCTCCCGATGAAG 638 || | || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| Sbjct 625 TTCGTGAAAGATTTCGTCCTTTATCAGAGAAAATGAAGCCTGAAGAATCTCCCGACGAAG 684 Query 639 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTTAATGGTGATG---A---CG 692 |||||||||||||||||||||||||||||||||||||||| ||||| |||| | | Sbjct 685 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTCAATGGCGATGGTGATAACA 744 Query 693 TTGGACAGAGAATTAGGATTCTTCCTGGAAGTTATAGCAGAAGAGTGGAGGAAAGGAACT 752 ||||||||||||||| ||||||||| |||| ||||| ||||||||| || |||||||||| Sbjct 745 TTGGACAGAGAATTAAGATTCTTCCCGGAACTTATAACAGAAGAGTTGAAGAAAGGAACT 804 Query 753 CGCTGTCTTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCGGTGGATGCGACGGTGG 812 |||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||||||| Sbjct 805 CGCTATCGTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCTGTGAATGCAACGGTGG 864 Query 813 AGGGACTACCGGAGGAAGATTTCTGTACGGAAGAGAAAGAGTACGACGGTGGAGACTCGA 872 ||||| |||||||| |||||||||||||||| || ||||||||||| || |||||||||| Sbjct 865 AGGGATTACCGGAGCAAGATTTCTGTACGGAGGAAAAAGAGTACGAGGGAGGAGACTCGA 924 Query 873 CGATGGAAGATTCGGTGGAAACACGCGCCGCTGGAAAAGCTGTAACTGTGAAACGGCATT 932 ||| |||||||||| ||||||| ||||||||| || ||||||||||||||||| |||| Sbjct 925 CGA---AAGATTCGGTTGAAACACTCGCCGCTGGGAATGCTGTAACTGTGAAACGACATT 981 Query 933 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCCTAAAA 972 |||||||||||||||||||||||||||||||||| ||||| Sbjct 982 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCTTAAAA 1021 Score = 163 bits (88), Expect = 3e-39 Identities = 118/131 (90%), Gaps = 7/131 (5%) Strand=Plus/Plus Query 970 AAATTTTATCAATCTTG---AAGATACATGAATAATC--AGAGCCATGTAGAGATACATA 1024 ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1047 AAATTTTATCAATCTTGCTTTTGATACATGAATAATCAGAGAGCCATGTAGAGATACATA 1106 Query 1025 TACACATTTTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATGTTTGAGCTAATGG 1084 |||||| |||||||||||||||||||||||||||||||||||||| |||| | || ||| Sbjct 1107 TACACA--TTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATTTTTGTGTTAGTGG 1164 Query 1085 ATACTATTCTC 1095 ||||||||||| Sbjct 1165 ATACTATTCTC 1175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53664382605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5