BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489312 Length=1255 Score E Sequences producing significant alignments: (Bits) Value AT5G24490.1 | Symbols: | 30S ribosomal protein, putative | chr... 1877 0.0 > AT5G24490.1 | Symbols: | 30S ribosomal protein, putative | chr5:8365601-8367460 FORWARD LENGTH=1298 Length=1298 Score = 1877 bits (1016), Expect = 0.0 Identities = 1159/1228 (94%), Gaps = 9/1228 (1%) Strand=Plus/Plus Query 35 CTCTCTCACTCT--CAAATGTCGACGCTTTTAGGTTTCTCTCAAACGAAGTTTCACCATT 92 |||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 73 CTCTCTCACTCTCACAAATGGCAACGCTTTTAGGTTTCTCTCAGACTAAGTTTCACCATT 132 Query 93 GCGGCGTCTCGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTGGTCTCAATGGTTG 152 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 133 GCGGCGTCTGGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTAGTCTCAATGGTGG 192 Query 153 GCTCGACCCGGACTGATTCGAAAAAGCTCCGGTCAGATTTCCTCGGCCATATTGGTTACG 212 ||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 193 GCTTGAATCGGACTGATTCGAAAAAGCTCCGTTCAGATTTCCTCGGCCAGATTGGTTACG 252 Query 213 ATGATCGGAGACAAGTAAGACCCAGTTCCTGTAAAAGCTCATTAGCTGTGAAAATGTCGT 272 | ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 253 AAGATCGGAGACAAGTAAGACACAGTTACTGTAGAAGCTCATTAGCTGTGAAAATGTCGT 312 Query 273 GGGACGGTCCTCTCGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 332 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 GGGACGGTCCTCTTGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 372 Query 333 AGCCAATCAAGCAGCATGTTGAAGATAAAGTAGGGAAATCTGTTCAGAAACACAGTCATC 392 ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 373 AGCCAATTAAGCAGCATGTTGAAGAGAAAGTAGGCAAATCTGTTCAGAAACACAGTCATC 432 Query 393 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGAGGCGGAGAGTTTGGTAAAGGCCCTA 452 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 433 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGTGGTGGAGAGTTTGGTAAAGGCCCTA 492 Query 453 GGATTCGTAGATGCGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 512 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 GGATTCGAAGATGTGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 552 Query 513 AAGATGCTGAGACGGTATATGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 572 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 553 AAGATGCTGAGACAGTATACGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 612 Query 573 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 672 Query 633 TGAAGGTAAGAGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGATAGTACTGACT 692 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 673 TGAAGGTAAGGGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGACAGTACTGACT 732 Query 693 CGAGCTTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 752 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 CGAGCGTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 792 Query 753 CTTTTGAGATGCCCCCATTGACTGTCTCTGAGGCAGTTGAGCAGCTGGAACTAGTCAGTC 812 |||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 793 CTTTCGAGATGCCACCATTGACTGTCGCTGAGGCAGTCGAGCAGCTGGAACTAGTCAGTC 852 Query 813 ATGACTTCTATGGCTTTCGAAATGAAGAAACTGGTGAGATTAACATAGTGTACAAGAGAA 872 | |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| Sbjct 853 ACGACTTCTATGGCTTCCAAAATGAAGAAACTGGTGAGATAAACATAGTGTACAAGAGAA 912 Query 873 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 972 Query 933 CGCTTCCAACCGAGCAACTGAATGAACACTCTTTCGCCGAGTAGACTGTCTCTGCTCACA 992 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 973 CGCTTCCAACCGAGCAATTGAATGAACACTCTTTCGCCGAGTAGACTGCCTCTGCTCACA 1032 Query 993 TCTAAACAGATCAGTTCATCTCTCCTTTCAGTTG-CTTGTGTAGGAGTTAGGGTTCTTGA 1051 | |||| ||| || |||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 1033 CCAAAACCGATAAGCTCATCTCTCCTTACAGTTTACCTGTGTAGGAGTTAGGGTTCTTGA 1092 Query 1052 GA-AAATAATGAAACAAAGATTGTAGAAGTCAGTGTACATaaaaaaa-GGCCAACCACTC 1109 | ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1093 -ATAAACAATGCAACAAAGATTGTAGAAGTCAGTGTACATAAAAAAATGGCCAACCACTC 1151 Query 1110 TTTGTATACTTTTGCG-TGAATCTGAAGATCTTAATTATCTTTAAATCAGATGATAGCAA 1168 ||||| |||||||| | |||| ||||||||||||| ||||| ||||||||||||||| Sbjct 1152 TTTGT-TACTTTTGTGGTGAAAAGGAAGATCTTAATTCTCTTTCCATCAGATGATAGCAA 1210 Query 1169 TACATTTTT-CATAAACAAGAATGTGACATAATAATCATACAACAGTTATCATCATATAC 1227 ||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1211 TACATTTTTTCATAAACAAGAATGTTACATAATAATCATACAACAGTCATCATCATATAC 1270 Query 1228 ATAAATGCGAAACTTAGTTTGGTTTAGT 1255 |||||||| |||||| |||||||||||| Sbjct 1271 ATAAATGCCAAACTTGGTTTGGTTTAGT 1298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61696469805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5