BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489350
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24870.1 | Symbols: | RING/U-box superfamily protein | chr5... 2817 0.0
AT5G10650.1 | Symbols: | RING/U-box superfamily protein | chr5... 488 8e-137
> AT5G24870.1 | Symbols: | RING/U-box superfamily protein | chr5:8544785-8547789
REVERSE LENGTH=2086
Length=2086
Score = 2817 bits (1525), Expect = 0.0
Identities = 1901/2073 (92%), Gaps = 63/2073 (3%)
Strand=Plus/Plus
Query 27 CTCAACGAAACCCAAAATCAACGGATCAGATCACTCCGACTTCTGTTTCGCCTTTGCTAC 86
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 33 CTCAACGAAACCCAAAATCAACGGCTCAGATCATTCCGACTTCTGTTTCGCCTTTGCTAC 92
Query 87 GCCA---CTTCTTCTTCTTCTCCGATTATAAATTAAAATCTCTCACAAAATTA--C---- 137
|||| ||||||||||||||||| || |||||||||| |||||||||||||| |
Sbjct 93 GCCACTTCTTCTTCTTCTTCTCCGGTTTTAAATTAAAACCTCTCACAAAATTATTCGGAA 152
Query 138 TA--ATTCCGAATAT-TTCTTCTTCTTCTTCCTCTTCATCGCATCTCTCTCACTCCACGT 194
|| ||| | | | ||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 153 TATTATTTCTTCT-TCTTCTTCTTCTTCTTCTTCATCATCGCATCTCTCTCACTTCACGT 211
Query 195 TTTCTTCGGTGAAGAGATAGCCTCCGGGAAAAGTTATCATCGCCGGAAATTTCAGAT-TT 253
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | | ||
Sbjct 212 TTTCTTCGGTGAAGAGATAGCCGCCGGAAAAAGTTATCATCTCCGGAAATTTC-GCTCTT 270
Query 254 AC-TTGCAGTGTATAAGGGTGTGTGTTATGTATGGATGGATTGAAGGGTAAAAGAACATT 312
| || | |||| | ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 271 TCTTTAC-GTGTTTGAGGGTGTGTTTTATGTATGGATGGATTTAAGGGTAAAAGAACATC 329
Query 313 TAGACCGATTATG-CAGCGGAAAGCGAGTGGTCTTGTTTTACATGAGAATATGAAGAAGA 371
||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 330 TAGACCGATTATGCCA-CGGAAAGCAAGTGGTCTTGTGTTACATGAGAATATGAAGAAGA 388
Query 372 AAGATGATAAGAGTCTTGTTCCTATCTGCAGTCGGATTGGTTGTAGTTCTAGGATTAGTT 431
|||||||||||||| |||| |||||||||||| | |||||||| ||||| ||| ||||||
Sbjct 389 AAGATGATAAGAGTGTTGTCCCTATCTGCAGTAGAATTGGTTGCAGTTCCAGGGTTAGTT 448
Query 432 CTACTAAGGGAGCTTTGATTGATCACAAAGCAAAATCTACTGTGTCTTCGTTTCGATCT- 490
| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 449 CCACTAAGGGAGATTTGATTGATCATAAAGCAAAAGCTACTGTGTCTTCGTTTCGATCTC 508
Query 491 TTTTCAAATGGAAAGGAATCCGTTGGGAGTTCATCTCGAAGTATGAGTGGATTTGGTGGT 550
||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 509 CTTT-GAGTGGAAAGGAAACCGTTGGTAGTTCATCTCGAAGTATGAGTGGATTTGGTGGT 567
Query 551 ACAAAAAAGGCTTCCAAAGTTGGTT-GTAGGAGACAACTCTCGTCTCTTTTGGATATGGA 609
||||||||||||||||| ||| || |||||||||||||||| ||||||||||| |||||
Sbjct 568 ACAAAAAAGGCTTCCAAGGTT-ATTGGTAGGAGACAACTCTCTTCTCTTTTGGACATGGA 626
Query 610 TTCTTCAGAGAGTAGCAGTGTTAATGAAGAGTCACCCACGAGTGAGCGTGT-CCTTCCAC 668
|||||||||||| ||||||||||||||||| |||||||| ||||||||| | |||||| |
Sbjct 627 TTCTTCAGAGAGCAGCAGTGTTAATGAAGACTCACCCACAAGTGAGCGT-TCCCTTCCTC 685
Query 669 GTGGAAAGACCAAAGAAAGCACTA-T-G-G-----T-T---A--A-TGTCTCTGGAGAAG 713
|||||||||| ||||||||||||| | | | | | | | ||||||||||||||
Sbjct 686 GTGGAAAGACAAAAGAAAGCACTATTAGTGTTCATTCTGAAAGTAGTGTCTCTGGAGAAG 745
Query 714 TTGTGACAGAGGCAGGAAGCTCGAGTAGAGGAACTGGCAGAAGCATTCATCAGAGACCTG 773
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 746 TTGTGACAGAGGCAGGAAGCTCGAGTAGAGGAACTGGTAGAAGCATTCATCAGAGACCTG 805
Query 774 ATTTGGTCTCCCGAGATGCACGTATGGGTAATAGTGAGCAAAATGCAAGAGCTAGTGTGA 833
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 806 ATTTGGTCTCCCGAGATGCTCGTGTGAGTAATAGTGAGCAAAATGCAAGAGCTAGTGTGA 865
Query 834 ACAAGAATGGATTGAGAGACTTGAGGAGCAAATCTGGTTCTGATGTTCTTCCATCTAATT 893
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 866 ACAAGAATGGATTAAGAGACTTGAGGAACAAATCTGGTTCTGATGTTCTTCCATCTAATT 925
Query 894 CAAATCCGACAAGAAAAAGTAACATATTTAGAAAGAAAAACTCTGATGGAGAGAGCAGCT 953
||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 926 CAACTCCGACAAGAAAAAGTAACATCTTTAGAAAGAAAACCTCTGATGGTGAGAGCAGCT 985
Query 954 CTTCGAATAGAGGGAATAAGACGGAAGGATCAGTGTTTGGGGGAAGGAAT-TTAAGTTCC 1012
|||||| |||||||||||||||||||||||||||| ||||||||| |||| || ||||||
Sbjct 986 CTTCGAGTAGAGGGAATAAGACGGAAGGATCAGTGGTTGGGGGAAAGAATATT-AGTTCC 1044
Query 1013 CCTCAGGGCAATGGCATCACCATATCTGAATCTAGAAGGAACAGAAA-TATACCAAGTGT 1071
|||||||| |||||||||||||| |||||| |||| ||||||||||| | ||||||||||
Sbjct 1045 CCTCAGGGGAATGGCATCACCATGTCTGAACCTAGGAGGAACAGAAACT-TACCAAGTGT 1103
Query 1072 TAGGGACAACAGTGTTGTTTCAAGTAGTACTAGGAGATCAACTGGTAATTATGGTAGAAC 1131
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1104 TAGGGACAACAGTGTTGTTTCAAGTAGTACTAGGAGATCAACTGGTTATTATGGTAGAAC 1163
Query 1132 AGGACGTGCTGGAGCGGTTGCAACTCTACAAGCGCCTCGGCCTGCAACACA-AGCTGATC 1190
|||||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||||||
Sbjct 1164 AGGACGTGCTGGAGCGGTTGCAACACTACAAGCACCTCGGCCTCCAACA-AGAGCTGATC 1222
Query 1191 TTAATCCTTCTAGATCTGCAGAAGTTTCGCGTAGTCCTTTAAATAGTTACAGTAGGCCAC 1250
| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1223 TCAATCCTTCTAGATCGGCAGAAGCTTCGCGTAGTCCTTTAAATAGTTACAGTAGGCCAA 1282
Query 1251 TCAGTAGTAATGGCAGGTTACGTAGCCTGATGATGCCTGGTAGCCCCTCAGAAGCCGGCC 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TCAGTAGTAATGGCAGGTTACGTAGCCTGATGATGCCTGGTAGCCCCTCAGAAGCCGGCC 1342
Query 1311 TTTCTCGCTCTTTGATGAACCGTGATGGTTTCAGACGGTATAACATGAATGGAGTTGCAG 1370
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1343 TTTCTCGCTCTTTGATGAACCGTGATACTTTCAGACGGTATAACATGAATGGAGTTGCAG 1402
Query 1371 AGGTATTGTTGGCACTGGAAAGGATTGAACAAGACGCAGAGCTTACATACGAGCAATTGG 1430
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1403 AGGTATTGTTGGCCCTGGAAAGGATTGAGCAAGACGAAGAGCTTACATACGAGCAATTGG 1462
Query 1431 CTGTTTTAGAGACCAATCTGTTCTTAAATGGTATGAGCAGCTTCCACGATCAGCATAGAG 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 CTGTTTTAGAGACCAATCTGTTCTTAAATGGTATGAGCAGCTTCCACGATCAGCATAGAG 1522
Query 1491 ATATGAGGCTTGACATTGATAACATGTCGTATGAGGAATTATTAGCACTGGAAGAGAAAA 1550
||||||||||||||||||| |||||||||||||||||| | |||||| | || |||||||
Sbjct 1523 ATATGAGGCTTGACATTGACAACATGTCGTATGAGGAACTGTTAGCATTAGAGGAGAAAA 1582
Query 1551 TGGGTACAGTGAGCACTGCTCTAAGCGAAGAAGCGCTTCTGAAAAGCCTGAAGTCAAGTA 1610
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1583 TGGGTACAGTGAGCACTGCTCTAAGCGAAGAAGCGCTTCTGAAAAGCCTCAAGTCAAGTA 1642
Query 1611 TTTACCGTCCAAATGATGAATCCGGCGACATGTGCCTGAACAAAGATGATGATGTAAAGT 1670
||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1643 TTTACCGTCCAAACGATGAATCCGACGACATTTGCCTGAACAAAGATGATGATGTCAAGT 1702
Query 1671 GCAGCATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGTAGGAACTTTGCCTTGCCAAC 1730
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1703 GCAGCATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGTAGGGACTTTGCCTTGCCAAC 1762
Query 1731 ATAAATACCACGTGAGCTGCGCGCAACAATGGCTTCGGATGAAGAATTGGTGTCCTATTT 1790
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1763 ATAAATACCACGTGAGCTGCGCGCAACAATGGCTACGGATGAAGAATTGGTGTCCTATAT 1822
Query 1791 GCAAAACCTCTGCAGAATCTCAACCACAGCCATTTTCATGATGATGGGATTTGCAGAGAC 1850
| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 1823 GTAAAACCTCTGCAGAATCTCAGCCACATCCATTTTCATGATGATGGGATT-GCAGAGAC 1881
Query 1851 ATC-ACCAAAGTGTTTGTCTCTCTACTTCCACCACATTGCTCTCTTTTATTTGTACATAA 1909
|| |||||||||||||| ||| |||||||| || ||||||||| ||||||||||||||
Sbjct 1882 ATTTACCAAAGTGTTTGTGTCT--ACTTCCACTACCTTGCTCTCTATTATTTGTACATAA 1939
Query 1910 AAGGTTT-CTTTTTTACTTACACACAATTGGGAATAAAATAGAAAATAAGATCAGGTGGA 1968
||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1940 AAGGTTTTCTTTTTTACTTACACACAATTGGGAACAAA-TAGAAAATAAGATCAGGTGGA 1998
Query 1969 CAAATTCCTT-TCTTTCACCT-GTATAAAGATT--TAACAT-AACCAATATTTGGTTTAA 2023
|||||| || | |||||||| |||| | || ||| | ||| ||||||||||||||
Sbjct 1999 CAAATTA-TTGT-TTTCACCTTGTATTG-G-TTCGTAATTTCAAC-AATATTTGGTTTAA 2053
Query 2024 TTCCATATGTAGTT-ATATACTGTTATTGCACT 2055
|||||||| ||||| ||||||||||||||||||
Sbjct 2054 TTCCATATATAGTTTATATACTGTTATTGCACT 2086
> AT5G10650.1 | Symbols: | RING/U-box superfamily protein | chr5:3364972-3368127
REVERSE LENGTH=1931
Length=1931
Score = 488 bits (264), Expect = 8e-137
Identities = 444/531 (84%), Gaps = 12/531 (2%)
Strand=Plus/Plus
Query 1283 ATGCCTGGTAGCCCCTCAGAAGCCGGCCTTTCTCGCTCTTTGATGAACCGTGATGGTTTC 1342
||||||||||||||| | ||||| | || ||| |||||||| ||||||| ||||||||
Sbjct 1124 ATGCCTGGTAGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTG 1183
Query 1343 AGACGGTATAACATGAATGGAGTTGCAGAGGTATTGTTGGCACTGGAAAGGATTGAACAA 1402
|| | || |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1184 AGTCACTACAACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACAT 1243
Query 1403 GACGCAGAGCTTACATACGAGCAATTGGCTGT-TTTAGAGACCAATCTGTTCTTAAATGG 1461
|| | |||||||||||| |||||| ||||| | | ||||||||||||| |||| || |||
Sbjct 1244 GATGAAGAGCTTACATATGAGCAACTGGCT-TCTATAGAGACCAATCTATTCTCAAGTGG 1302
Query 1462 TATGAGCAGCTTCCACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCGTA 1521
|||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1303 TATGTTCAGATTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATA 1362
Query 1522 TGAGGAATTATTAGCACTGGAAGAGAAAATGGGTACAGTGAGCACTGCTCTAAGCGAAGA 1581
|||||| ||| |||| ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1363 TGAGGAGTTACTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGA 1422
Query 1582 AGCGCTTCTGAA-AAGCCTGAAGTC-AAGTATTTA-CCGTCCAAATGATGAATCCGGCGA 1638
||| | ||| || |||||| ||| | ||| ||||| | | | | |||||| ||||
Sbjct 1423 AGCAC-TCTCAAGAAGCCTTAAG-CAAAGCATTTATCAGGAGACA-GATGAAACCGGTTC 1479
Query 1639 CATGTGC-CTGAACAAAGATGATGATGTAAAGTGCAGCATTTGCCAGGAAGAGTATGTTG 1697
||| | | ||| | || ||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1480 CATCT-CTCTGTATAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTG 1538
Query 1698 ATGGAGATGAAGTAGGAACT-TTGCCTTGCCAACATAAATACCACGTGAGCTGCGCGCAA 1756
||||||||||| |||| ||| || || || ||||||| ||||| |||||||| | |||
Sbjct 1539 ATGGAGATGAATTAGGGACTATT-CCATGTCAACATATGTACCATGTGAGCTGTGTACAA 1597
Query 1757 CAATGGCTTCGGATGAAGAATTGGTGTCCTATTTGCAAAACCTCTGCAGAA 1807
|||||||| ||||||||||||||||| || || |||||||||||||| |||
Sbjct 1598 CAATGGCTGCGGATGAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAA 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5