BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489353 Length=1445 Score E Sequences producing significant alignments: (Bits) Value AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:85... 2017 0.0 AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10... 207 2e-52 > AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589234-8591236 FORWARD LENGTH=1599 Length=1599 Score = 2017 bits (1092), Expect = 0.0 Identities = 1310/1407 (93%), Gaps = 48/1407 (3%) Strand=Plus/Plus Query 1 AATGCCAAGTAATTTCATCTCAATACAATAAAATTACGTTGTTTGGCTAAGATTTCACCA 60 ||||||||||||||||| || | | ||||||||||||||||||||||||||||| |||| Sbjct 1 AATGCCAAGTAATTTCA--TC-AGA-AATAAAATTACGTTGTTTGGCTAAGATTTTACCA 56 Query 61 CGTGTCAACATTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 CGTGTCAACTTTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 116 Query 121 TGACACGCTCATGTGAAGCC-ATAGTAACACCAACCACaaaagaaagaga-a-agagaga 177 |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 117 TGACACGCTCATGTGAAGCCAATAGTAACACCAACCACAAAAGAAAGAGAGAGAGAGAGA 176 Query 178 ga--g-accct--------------gaa-a--cctagagagagaaaaaTGGCGTCTAAGC 217 | | | | | ||| | ||||||||||||||||||||| |||| Sbjct 177 CACTGAAACATAGAGAGAAGAAAAAGAAGAGGTTTAGAGAGAGAAAAATGGCGTCAAAGC 236 Query 218 TCTGCGATTCGTGCAAATCGGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 277 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCTGCGATTCGTGCAAATCAGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 296 Query 278 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 356 Query 338 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 416 Query 398 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTAATCCGTTAGCTCGCC 457 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 417 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATCCACTCGGCTAATCCGTTAGCTCGCC 476 Query 458 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 536 Query 518 AACATACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGACGGTAACGGAA 577 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 537 AACACACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGATGGTAACGGAA 596 Query 578 GCCGTGTAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTG---CTTCCGAATCCGAAGACTA 634 |||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 597 GCCGTGAAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTGTTACTTCCCAATCCAAAGACTA 656 Query 635 CGACGGCTGCGACGGCGGGGATGGTTGCTGTTACTGCAGCTGAGGAAGTTCCGGGAGATA 694 | ||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 657 CAACGACGGCGACGGCGGGGATCGTTGCTGTTACTTCAGCTGAGGAAGTTCCGGGAGATA 716 Query 695 GTCCGGAGATGAACACGGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 754 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GTCCGGAGATGAACACTGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 776 Query 755 TGGATTACGGGAGTGTTGATCCAAAAGTGGAATCGTTGGAGCAGAATAGCTCCGGTACCG 814 ||||||| || | ||||||||| || ||||||||||| |||||||||||||||||||| | Sbjct 777 TGGATTATGGAAATGTTGATCCGAAGGTGGAATCGTTAGAGCAGAATAGCTCCGGTACTG 836 Query 815 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGGTTCCGACGGTGAACGAGAATTGCT 874 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 837 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGATTCCGACGGTGAACGAGAATTGCT 896 Query 875 ATGAAATGGATTTTACCGGAGGATCTAAAGGCTTTGCTTATGGTGGT--T-ACAATTGCA 931 |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| Sbjct 897 TTGAAATGGATTTTACCGGAGGATCTAAAGGCTTTACTTATGGTGGTGGTTACAATTGCA 956 Query 932 TCAGTCACAGCGTCTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGCTCTG 991 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 957 TCAGTCACAGCGTGTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGTTCGG 1016 Query 992 TGGCCGATGTTTCGTATCCTTACGGTGGTCCGGCAACCAGTGGAGCAGATCCCGGAAGC- 1050 |||| ||||| |||||||||||||||||||| |||||||||||||| ||||| || | | Sbjct 1017 TGGCTGATGTATCGTATCCTTACGGTGGTCCTGCAACCAGTGGAGCTGATCCGGGGA-CA 1075 Query 1051 CAGCGGGCTGTTCCGCTGACTTCAGCTgagagagaggcgagggtaatgaggtacagagag 1110 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1076 CAGCGGGCTGTTCCGCTGACTTCAGCTGAGAGAGAAGCGAGGGTAATGAGGTACAGAGAG 1135 Query 1111 aagaggaagaacaggaagtttgagaagaCGATAAGGTATGCTTCAAGGAAAGCTTATGCG 1170 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1136 AAGAGGAAGAACAGGAAGTTTGAGAAGACTATAAGGTATGCTTCAAGGAAAGCGTATGCG 1195 Query 1171 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAGTGAGAGCAGT 1230 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1196 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAATGAGAGCAAT 1255 Query 1231 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACGTTTTAGATA 1290 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1256 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACATTTTAGATA 1315 Query 1291 TTGAGAGAGAAAGATAGAGACTCTAAAAATGGAAG-T--TGG-T--TT-GGTGTTTGTTT 1343 ||||||||| || |||||||||||| |||||| | ||| | || ||||||||||| Sbjct 1316 TTGAGAGAGG--GA--GAGACTCTAAAA-TGGAAGATGGTGGGTGGTTTGGTGTTTGTTT 1370 Query 1344 TAGTAATAATGTTTT-AACGAACGttt 1369 ||||||||| ||||| ||||||||||| Sbjct 1371 TAGTAATAAGGTTTTTAACGAACGTTT 1397 > AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10566898-10568145 FORWARD LENGTH=1145 Length=1145 Score = 207 bits (112), Expect = 2e-52 Identities = 233/290 (80%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 209 CGTCTAAG-CTCTGCGATTCGTGCAAATCGGCGACGGCGGCGT-TATACTGCCGAC-CAG 265 |||| ||| || |||||||||||||||||| || | || | | ||| |||||| | ||| Sbjct 72 CGTC-AAGACTTTGCGATTCGTGCAAATCGACGGCAGCAAC-TCTATTCTGCCG-CGCAG 128 Query 266 ACGCAGCGTTTCTATGCTTAAG-CTGCGATTC-AAAAG-TCCACGCGGCGAACAAACTCG 322 |||| |||||||| ||| | |||||| | ||| ||||| | || |||||||||| Sbjct 129 ACGCCGCGTTTCTCTGC-GGCGACTGCGA--CGGTAAGATCCACACAGCTAACAAACTCG 185 Query 323 CGTCACGACACGCGCGCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCA 382 | ||||| |||| || || ||| | |||||||| ||||| |||||||| |||||||||| Sbjct 186 CATCACGTCACGAACGAGTTTGGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCA 245 Query 383 CGTGCAAAGCAGACGCGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTA 442 |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||| Sbjct 246 CGTGCAAAGCTGACGCCGCTGCGTTATGCGTCACGTGCGACCGTGATATCCACTCAGCTA 305 Query 443 ATCCGTTAGCTCGCCGTCACGAACGCGTTCCCGTTACTCCGTTT-TACGA 491 |||| | ||||||| ||||| ||||| || | ||||| ||| ||||| Sbjct 306 ATCCACTCTCTCGCCGCCACGAGCGCGTACCAATCACTCC-TTTCTACGA 354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71234573355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5