BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489367 Length=2183 Score E Sequences producing significant alignments: (Bits) Value AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:86... 3374 0.0 > AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677091-8682205 FORWARD LENGTH=2183 Length=2183 Score = 3374 bits (1827), Expect = 0.0 Identities = 2069/2187 (95%), Gaps = 11/2187 (1%) Strand=Plus/Plus Query 1 ATCgagagagagagagaAGCGAGAACAATAATGGATCCAGAGCAAATCAACGAGTTCGTT 60 |||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||| Sbjct 1 ATCGAGAGAGAGAGAG-A--GAG-ACAACAATGGATCCAGAGCAAATCAACGAGTTCGTC 56 Query 61 GTGGGTTACTTGAAGAAGAAAGGATTCAATAGCGCTGCTAAAGACCTTGAAGCTTATCAT 120 ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 57 GTGGGCTACTTGAAGAAGAAAGGATTCAGTAGCGCTGCTAAAGACCTTGAATCTTATCAT 116 Query 121 CACCACAACAACAATGGTAGCAGTTTCACTTCTACCGATTATCATAACGATCCTGAGCTC 180 ||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 117 CACCAGAACAATAATGGTAGCTCCTTCACTTCTGTCGATTATCATAACGATCCTGAGCTC 176 Query 181 ACCAAACTCATCCGCTCCTTTTCCCAACAAGAAGATGATCCTACTCGGTACCGTGAGGGT 240 || || ||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 177 ACGAAGCTCATTCGCTCCTTTTCTCAACAAGAAGATGATCCAACTCGGTACCGTGAAGGT 236 Query 241 TACAGCAATCTAAGGTCATGGGCTTATAATTCACTCGATTTATATAAGCATGAATTGCTT 300 |||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct 237 TACAGCAAACTAAGGTCATGGGCGTATAATTCTCTGGATTTATATAAGCATGAATTGCTT 296 Query 301 CGAGTTATGTATCCTGTGTTTATTCATTGTTACATGGATTTGGTGGGAAAAGGGCACACT 360 ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 297 CGAGTGATGTATCCTGTGTTTATTCATTGTTACATGGATCTGGTGGGGAAAGGGCACACT 356 Query 361 CAAGAAGCGAGAGGCTTCTTTAACAGCTTCCGCAGAGATCATGAGATGGTACACTTACGG 420 |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 CAAGAAGCTAGAGCCTTCTTTAACAGCTTCCGCAAAGATCATGAGATGGTACACTTACGG 416 Query 421 GATCTTCAGAA-ATTGGAAGGTGTTCTTGCTCCATCTCATCTAGAGGAGATGGAGTTTGC 479 ||||||||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 417 GATCTTCAGAAGCTT-GAAGGCGTGCTTTCTCCATCTCATCTAGAGGAGATGGAGTTTGC 475 Query 480 TCGTTCTCTTAGAAAAAGCAAGGTCAACATCAAGATTTCTCAGTATTCATATGATCTGTT 539 |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||| Sbjct 476 TCGTTCTCTTAGAAAAAGCAAGGTTAACATCAAGTTTTGTCAGTATTCATATGAGCTGTT 535 Query 540 AATTCAGTATCTACAAAGGACAAAATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 599 | ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| Sbjct 536 ACTTCAGTATCTACATAGTACAGTATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 595 Query 600 CAATTTCCAAGTCTACTCAGGACAACCTACTCCCTCATCCGATGACATAGAAGCTGTCAC 659 |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| Sbjct 596 CAATTTCCAAGTCTACTCGGGACAGCCTACTTCCTCATCCGATGACATAGAAGCTGTCAC 655 Query 660 CATTTTTGGGAGTTTTCAGGACACAGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 719 |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 656 CATTGTCGGGAGTTTTCAGGACACTGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 715 Query 720 ATTGCTTGAAGACTCGCTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 779 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 ATTGCTTGAAGATTCACTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 775 Query 780 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 835 Query 840 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTAAAGAAGGACAAAGCGGGAAATGC 899 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 836 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTGAAGAAGGACAAAGCGGGTAATGC 895 Query 900 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGCCACCGGCCCCACGTGTAAAACC 959 ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct 896 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGTCACCGGCGCCGCGTGTAAAACC 955 Query 960 AGAACTTGCCTTGCCAGTAATGTCTACAGACGTAGAGCAATCCATCCTTGAAGACCTGAG 1019 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || Sbjct 956 AGAACTTGCCTTGCCAGTAATGTCCACAGATGTAGAGCAATCCATCCTTGAAGACCTTAG 1015 Query 1020 AAACCGTGTGCAGTTGAGCAGTGTCGCAATGCCTTCAGTCAGCTTTTATACATTTGTGAA 1079 |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct 1016 AAACCGTGTGCAGTTGAGTAGTGTTGCAATGCCATCAGTCAGCTTTTATACATTTGTGAA 1075 Query 1080 TACTCATAACGGGTTAAATTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1139 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 TACTCATAACGGGTTAAACTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1135 Query 1140 GTTCTCAGATTCATCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1199 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GTTCTCAGATTCTTCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1195 Query 1200 TGTTTTGCAGGGTGAAAATGATACAAATGATCAAATTATGGGACCAAATGGCAGAAGAAG 1259 || |||||||| |||||||||| ||| |||||||| || |||||||||||||||||||| Sbjct 1196 TGCTTTGCAGGCTGAAAATGATTCAAGTGATCAAAGCATAGGACCAAATGGCAGAAGAAG 1255 Query 1260 TTATACATTATTACTGGGTCACTCAGGGCCAGTTTACTCGGCCACTTTTAGTCCCCCTGG 1319 ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 1256 TTATACATTATTACTGGGTCATTCAGGGCCAGTTTACTCAGCCACTTTCAGTCCCCCTGG 1315 Query 1320 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATTCGACTGTGGAGCACAAAACTAAA 1379 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1316 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATACGACTGTGGAGCACAAAACTAAA 1375 Query 1380 TGCCAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGTCCAGTTTAGCCC 1439 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1376 TGCTAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGCCCAGTTTAGCCC 1435 Query 1440 TTTCGGTCATTACTTTGCAAGTTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1499 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1436 TTTCGGTCATTACTTTGCAAGCTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1495 Query 1500 CCGAATTCAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1559 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 CCGAATACAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1555 Query 1560 GCATCCCAATTGTAACTACATTGCAACCGGTTCTAGCGATAAGACGGTTAGACTGTGGGA 1619 |||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| Sbjct 1556 GCATCCCAATTGTAACTACATTGCTACCGGTAGTAGTGATAAGACGGTTAGACTCTGGGA 1615 Query 1620 TGTGCAAACTGGGGAGTGTGTCCGGATATTCGTTGGGCACAGGAGTATGGTTTTATCATT 1679 |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1616 TGTGCAAACTGGAGAATGTGTCCGGATATTCATTGGGCACAGGAGTATGGTTTTATCATT 1675 Query 1680 GGCGATGTCTCCGGATGGGAGATATATGGCCTCCGGTGATGAAGATGGCACCATAATGAT 1739 |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1676 GGCGATGTCTCCAGATGGGAGATATATGGCTTCCGGTGATGAAGATGGCACTATAATGAT 1735 Query 1740 GTGGGACCTCTCAACAGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1799 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 GTGGGACCTCTCAACTGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1795 Query 1800 GAGTCTCTCTTACAGCGGCGAGGGCTCTCTTCTGGCTTCTGGATCTGCAGACTGCACAGT 1859 ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1796 GAGTCTCTCATACAGCGGGGAGGGCTCTCTTCTGGCTTCTGGATCCGCAGACTGCACAGT 1855 Query 1860 GAAACTGTGGGACGTCACCTCAAGTACCAAATTAACAAAGGCCGAGGCAAAGAATGGGAA 1919 |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || Sbjct 1856 GAAACTGTGGGACGTCACTTCAAGTACCAAATTGACAAAGGCCGAGGAAAAGAATGGAAA 1915 Query 1920 CACCAACAGGTTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1979 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 CTCGAACAGATTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1975 Query 1980 CAGATTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGC-ACTCTCTAAACCCGCAAGCT 2038 | | ||||||||||||||||||||||||||||||||||| | ||||||||||||||| || Sbjct 1976 CCGGTTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGCGA-TCTCTAAACCCGCAAACT 2034 Query 2039 GATCAAAACAATGGTATCAGATATTGATACTTTAACATTCATACAAGCTGTTTGTAGATC 2098 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 2035 GATCAAAACAATGGTATCAGATATTGATGCTTTAACATTCTTACAAGCTGTT-GTAGATC 2093 Query 2099 --AGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGTTTGTGGCTTTTGTT 2156 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2094 TCAGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGCTTGTGGCTTTTGTT 2153 Query 2157 TCTCATTTCTAAATCACAAAGATGTTG 2183 ||||||||||||||| |||| |||||| Sbjct 2154 TCTCATTTCTAAATCCCAAAAATGTTG 2180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108282575565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5