BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489420
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25610.1 | Symbols: RD22, ATRD22 | BURP domain-containing pr... 2422 0.0
> AT5G25610.1 | Symbols: RD22, ATRD22 | BURP domain-containing
protein | chr5:8914233-8916800 REVERSE LENGTH=1560
Length=1560
Score = 2422 bits (1311), Expect = 0.0
Identities = 1483/1565 (95%), Gaps = 16/1565 (1%)
Strand=Plus/Plus
Query 1 TCATAACTTCAACCTCAGCTGCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATAACTTCAACCTCAGCTCCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60
Query 61 CTTGCCACTTCTTCTCCTCAAATTCATCAAACCCATTTCAATTCCAACCCCCAAAAATGG 120
| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 61 CGTACCACTTCTTCTCCTCAAATTCATCAAACCCATTTCTATTCCAACTCCCAAAAATGG 120
Query 121 CTATTCGTCTTCCTGTGATCTGTCTTCTTGGTTCATTCATGGTCGTAGCGATTGCGGCTG 180
| |||||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 121 CGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCATTCATGGTAGTGGCGATTGCGGCTG 180
Query 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240
Query 241 TCCATAATCTTTTGACTCTT-GATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATAATCTTTTGACT-TTCGATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299
Query 300 AAAGGCGGCGTAAACGTTAACGCCCATAAAGGTAAACCCGGCGGCGGAACCGCCGTGAAC 359
|||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 300 AAAGGCGGAGTAAACGTTAACACCCATAAAGGTAAAACCGGTAGCGGAACCGCCGTGAAC 359
Query 360 GTTGGAAAGGGAGGTGTACGCGTGGACACGGGCAAGGGTAAGCCCGGAGGAGGGACACAC 419
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 360 GTTGGAAAGGGAGGTGTACGCGTGGACACAGGCAAGGGCAAGCCCGGAGGAGGGACACAC 419
Query 420 GTTAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479
Query 480 GGTAAGAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTAAAAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539
Query 540 GGAAGACCTATTTACGTCGGTGTGAAACCAGGAGCCAACCCTTTCGTATATAACTATGCA 599
|||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 540 GGAAGACCGATTTACGTTGGTGTGAAACCAGGAGCAAACCCTTTCGTGTATAACTATGCA 599
Query 600 GCAAAGGAGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GCGAAGGAGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659
Query 660 TTGGTTC-CTGGAAAAGCTATGAACGTCCGGTTTAACGCGGAGGATGGTTACGGAGGCAA 718
||||||| | || |||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 660 TTGGTTCGC-GGGAAAGAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGGAGGCAA 718
Query 719 AACTGCGTTCTTGCCACGTGGAGAGGCGGAAACGGTGCCGTTTGGGTCGGAGAAGTTTTC 778
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 719 AACTGCGTTCTTGCCACGTGGAGAGGCTGAAACGGTGCCTTTTGGATCGGAGAAGTTTTC 778
Query 779 GGAGACGTTGAAACGTTTCTCTGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGAGACGTTGAAACGTTTCTCGGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838
Query 839 GACGATTGACGAGTGTGAAGCGAAAAAAGTCGGTGGAGAAGAGAAGTATTGTGCGACGTC 898
||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||||||
Sbjct 839 GACCATTGAGGAGTGTGAAGCCAGAAAAGTTAGTGGAGAGGAGAAGTATTGTGCGACGTC 898
Query 899 TCTGGAGTCGATGGTCGATTTTAGTGTTTCGAAACTTGGGAAATATCACGTCAGGGCTGT 958
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 TTTGGAGTCGATGGTCGACTTTAGTGTTTCGAAACTTGGTAAATATCACGTCAGGGCTGT 958
Query 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018
Query 1019 GGTAAAGAAGTTGTCTGACGACAAATCGGTGGTGTGTCACAAACAGAAGTACCCATTTGC 1078
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1019 GGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTACCCATTCGC 1078
Query 1079 TGTGTTCTACTGTCACAAGGCGATGATGACGACCGTCTACGCGGTTCCACTAGAAGGAGA 1138
||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1079 GGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTCGAGGGAGA 1138
Query 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCGTGGAACCC 1198
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCTTGGAACCC 1198
Query 1199 AAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGAACCGTTCCCGTCTGCCACT 1257
|||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||
Sbjct 1199 AAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGTCTGCCACT 1257
Query 1258 TCCTCCCGGAGTCTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTGTCTATCTT-T 1316
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1258 TCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTTTCTATCTTAT 1317
Query 1317 TGTGGGTTATATGTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1376
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGTGGGTTAT--GTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1375
Query 1377 AAGATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AATATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1435
Query 1437 ATGTTTCTTTTTTAAA-AACCTACGTAGCTGTCTTTTGTGGTTTGCT-TCTTGTGTTTTT 1494
|||||| |||||| | ||||||||||||||||||||||||| || | ||||||| ||||
Sbjct 1436 ATGTTTTTTTTTTTATTAACCTACGTAGCTGTCTTTTGTGGTCTG-TATCTTGTGGTTTT 1494
Query 1495 GCAAGAAAA-TATAATAAAATTAGAGTTGAAATGTTACCATTTCTATGTTTTGAG-TCAA 1552
|||| ||| |||||||||||||||| |||||||||||||||||||||||||| | | ||
Sbjct 1495 GCAA-AAACCTATAATAAAATTAGAGCTGAAATGTTACCATTTCTATGTTTTG-GCTTAA 1552
Query 1553 TTGAC 1557
|||||
Sbjct 1553 TTGAC 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5