BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489422 Length=1878 Score E Sequences producing significant alignments: (Bits) Value AT5G25630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1421 0.0 > AT5G25630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8947223-8949457 FORWARD LENGTH=2036 Length=2036 Score = 1421 bits (769), Expect = 0.0 Identities = 903/965 (94%), Gaps = 20/965 (2%) Strand=Plus/Plus Query 1 TTTTCCGACAAAACATGGGAGATG-T--TGAGGAGAAGAAGAAAGTACTTCCTATGTCTG 57 |||||||||||||||||| ||||| | | |||||||||||||||||| ||| ||||||| Sbjct 190 TTTTCCGACAAAACATGGAAGATGTTAATCAGGAGAAGAAGAAAGTACCTCCAATGTCTG 249 Query 58 AACCAGAAAGATCCACACCCA-T-----T--------A-AGTATCGTTTCTGCAAGTCAT 102 ||||||||||||||||||| | | | | ||||||||||||||||||||| Sbjct 250 AACCAGAAAGATCCACACCGATTAAGACTACAGGAGGACAGTATCGTTTCTGCAAGTCAT 309 Query 103 GTGGTGAAGGAAGTAGTTGTAGGACAGTGAGGTCAAGAACGAAGCTTATGAACGTTTTGA 162 ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 310 GTGTTGAAGGAAGTAGTTGCAGGACAGTGAGGTCAAGAACCAAGCTTATGAACGTTTTGA 369 Query 163 TAGAACGTGGACGGCCTCACGAGGCTCAAACTGTTTTCAAAACATTGGCAGAGACGGGTC 222 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 370 TAGAACGTGGAAGACCTCACGAGGCTCAAACTGTTTTCAAAACATTGGCAGAGACGGGAC 429 Query 223 ATAGGCCGTCTTTGATCAGTTACACAACTCTTTTAGCTGCAATGACGGTTCAGAAGCAGT 282 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 430 ATAGACCGTCTTTGATCAGTTACACAACTCTTTTAGCTGCAATGACGGTTCAGAAACAGT 489 Query 283 ATGGTTCCATAAGCTCTATAGTCTCTGAAGTGGAACAGAGCGGGA-CAAAGCCTGATTCC 341 |||||||||||||||||||||||||||| |||||||||||||| | |||| | |||||| Sbjct 490 ATGGTTCCATAAGCTCTATAGTCTCTGAGGTGGAACAGAGCGGAACCAAA-CTTGATTCT 548 Query 342 ATCTTCTTCAATGCTGTAATTAACGCTTTCTCTGAGTCCGGTAACATGGAAGATGCGGTG 401 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 549 ATATTCTTCAATGCTGTTATTAACGCTTTCTCTGAGTCCGGTAACATGGAAGATGCGGTG 608 Query 402 CAGGCTCTGTTGAAAATGAAAGAACTTGGTCTAAATCCAACTACGAGTACTTACAACACT 461 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 609 CAAGCTCTGTTGAAAATGAAAGAACTTGGTCTAAATCCGACTACGAGTACTTACAACACT 668 Query 462 TTGATTAAAGGGTATGGGATTGCAGGTAAGCCTGAGAGATCATCTGCGTTACTGGATCTT 521 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 669 TTGATTAAAGGGTATGGGATTGCAGGTAAGCCTGAGAGATCATCTGAGTTACTGGATCTT 728 Query 522 ATGTTGGAGGAGAGCAACGTCGATGTTAGACCGAATGTAAGGACGTTTAATGTGCTGGTG 581 |||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 729 ATGTTGGAAGAGGGCAACGTCGATGTTGGACCGAATATAAGGACGTTTAATGTGTTGGTG 788 Query 582 CAAGCCTGGTGCAAGAAAAAGAAGGTGGAGGAGGCGTGGGAAGTGGTGAATAAGATGGAA 641 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 789 CAAGCCTGGTGCAAGAAGAAGAAGGTGGAGGAGGCGTGGGAAGTGGTGAAGAAGATGGAG 848 Query 642 GAGTGTGGAGTTAGGCCGGATACAGTGACTTATAACACGATTGCAACTTGTTATGTGCAG 701 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 849 GAGTGTGGAGTTAGGCCGGATACGGTGACTTATAACACGATTGCAACTTGTTATGTGCAG 908 Query 702 AAAGGAGAGACTGTGAGAGCTGAGAGTGAGGTGGTTGAGAAGATGGTTATGAAGGAGAAG 761 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 AAAGGAGAGACCGTGAGAGCTGAGAGTGAGGTGGTTGAGAAGATGGTTATGAAGGAGAAG 968 Query 762 GCTAAACCAAACGGAAGGACTTGTGGGATAGTTGTGGGAGGGTATTGCAGAGAAGGGAGA 821 || ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 969 GCGAAACCGAACGGAAGAACGTGTGGGATTGTTGTGGGAGGGTATTGCAGAGAAGGGAGA 1028 Query 822 GTGAGAGATGGTTTGAGGTTTGTGCGGAGAATGAAGGAAATGAGAGTTGAAGCGAACCTC 881 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1029 GTGAGAGATGGTTTGAGGTTTGTGCGGAGAATGAAGGAAATGAGAGTGGAAGCGAATCTT 1088 Query 882 GTGGTCTTCAATTCCTTGATAAATGGCTTTGTTGAAGTCATGGACCGTGATGGTATCGAT 941 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1089 GTGGTCTTCAATTCTTTGATCAATGGCTTTGTTGAAGTCATGGACCGTGATGGTATCGAT 1148 Query 942 GAGGT 946 ||||| Sbjct 1149 GAGGT 1153 Score = 1341 bits (726), Expect = 0.0 Identities = 763/781 (98%), Gaps = 2/781 (0%) Strand=Plus/Plus Query 943 AGGTTCTTACCTTGATGAAGGAGTGTAACGTGAAGGCAGATGTAATCACGTACAGTACTG 1002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 AGGTTCTTACCTTGATGAAGGAGTGTAACGTGAAGGCAGATGTAATCACGTACAGTACTG 1284 Query 1003 TGATGAACGCTTGGAGCTCAGCTGGATACATGGAGAAAGCTGCACAAGTGTTTAAAGAAA 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 TGATGAACGCTTGGAGCTCAGCTGGATACATGGAGAAAGCTGCACAAGTGTTTAAAGAAA 1344 Query 1063 TGGTTAAAGCAGGAGTCAAACCAGACGCTCACGCTTACAGCATTTTAGCGAAAGGGTACG 1122 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1345 TGGTTAAAGCAGGAGTCAAACCAGACGCTCACGCGTACAGCATTTTAGCTAAAGGGTACG 1404 Query 1123 TTAGAGCAAAAGAGCCAAAGAAAGCTGAGGAGCTTCTTGAGACATTGATAGTTGAATCCA 1182 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1405 TTAGAGCAAAAGAGCCAAAGAAAGCAGAGGAGCTTCTTGAGACATTGATAGTTGAATCCA 1464 Query 1183 GGCCTAACGTTGTGATCTTCACCACGGTGATCAGCGGGTGGTGTAGCAGTGGAAGTATGG 1242 ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 1465 GGCCTAACGTTGTGATCTTCACCACTGTGATTAGCGGGTGGTGTAGCAATGGAAGTATGG 1524 Query 1243 ATGATGCAATGAGGGTTTTCAACAAGATGTGCAAGTTCGGGGTTTCGCCAAATATAAAGA 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1525 ATGATGCAATGAGGGTTTTCAACAAGATGTGCAAGTTCGGGGTTTCGCCAAATATAAAGA 1584 Query 1303 CGTTTGAGACGT-TGATGTGGGGATACCTAGAGGTGAAGCAACCATGGAAAGCAGAAGAG 1361 |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1585 CGTTTGAGAC-TCTGATGTGGGGTTACCTAGAGGTGAAGCAACCATGGAAAGCAGAAGAA 1643 Query 1362 GTTTTGCAGATGATGAGAGGGTTTGGTGTGAAGCCTGAGAATTCCACCTTCTTGCTGTTA 1421 |||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||| Sbjct 1644 GTTTTGCAGATGATGAGAGGATGTGGTGTAAAGCCTGAGAATTCTACCTTCTTGCTGTTA 1703 Query 1422 GCAGAAGCTTGGCGTGTCGCGGGACTCACTGATGAGTCGAACAAGGCTATCAATGCATTG 1481 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1704 GCAGAAGCTTGGCGTGTCGCGGGACTCACTGATGAGTCGAACAAAGCTATCAATGCATTG 1763 Query 1482 AAATGTAAGGACATAGAGATCGCAAAGTTAGAGAAGCTGTACCAAAAACAGTCCTCTGGT 1541 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1764 AAATGTAAAGACATAGAGATCGCAAAGTTAGAGAAGCTGTACCAAAAACAGTCCTCTGGT 1823 Query 1542 AGTAGTTTTAATCTATTGCAGATTCCAGTCGGGAAACGGGAGCTTCCAACCGCAAAAGCG 1601 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1824 AGTAGTTTTAACCTATTGCAGATTCCAGTCGGGAAACGGGAGCTTCCAACCGCAAAAGCG 1883 Query 1602 ATGAATCTTTCTGCTTGTAAACTCGGAGCTCGAGTGCCAATCATATGCCAGAAGCAGTCC 1661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1884 ATGAATCTTTCTGCTTGTAAACTCGGAGCTCGAGTGCCAATCATATGCCAGAAGCAGTCC 1943 Query 1662 CAAGCACAGTTTGGGATCAGTGGACAGTTTGTACATTCTTGTACAGTGTTCTTGAACTGA 1721 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1944 CAAGCACAGTTTGGGATCAGTGGACAGTTTGTACATTCTTGTACAGTGTTCTTGAGCTGA 2003 Query 1722 A 1722 | Sbjct 2004 A 2004 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92971409340 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5