BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489451 Length=1277 Score E Sequences producing significant alignments: (Bits) Value AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:9099... 1927 0.0 > AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:9099157-9101636 REVERSE LENGTH=1366 Length=1366 Score = 1927 bits (1043), Expect = 0.0 Identities = 1149/1201 (96%), Gaps = 4/1201 (0%) Strand=Plus/Plus Query 2 aaaaaaaTATCTCACCGCTTCAGACCAAAACCTCATATGACAGATACCCGAGTCATCTCG 61 |||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 5 AAAAAAATATCTCACCGCTTCAGACCAAAAACT-A-ATGACACATACCCGAGTCATCTCG 62 Query 62 ACCTGGACCGAGTTAACTCGCGACTCAGCTATTTACTTGCTCTTCACGTTTTTCGCCATC 121 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 63 ACCTGGACCGAGTTAACTCGCGACTTAGCTATTTACTTGCTCTTCACGTTTTTCGCAATC 122 Query 122 AAAGTCTACATATTTCTCTTCTGCTGTAATCGAACATCTGAATTGTCATCGTTTTCGATG 181 ||||||| || ||||||||||| |||||||||||| |||||| | ||||||||||||||| Sbjct 123 AAAGTCTTCAAATTTCTCTTCTCCTGTAATCGAACCTCTGAAATATCATCGTTTTCGATG 182 Query 182 GCGACTCATCCCGAAGCTCTCCGGCGAGAACGAATTATCAACAGCAAACTCTACTTCGAC 241 ||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||| Sbjct 183 GCGACTCATCCCGAAGCTCTCCGACGAGAGCGAATTCTCAACAGTAAACTCTACTTCGAC 242 Query 242 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGGCGTATGATATTTCGTTCATGGGT 301 |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| Sbjct 243 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGTCTTATGATATCTCGTTCATGGGT 302 Query 302 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 362 Query 362 TCAGATGGGTTTTTGGAGGAGAAAGCAATTATTGAGCCTCTTGAAGCTTCAAAGAATGAT 421 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 363 TCAGATGGGTTTCTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGAT 422 Query 422 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGTAGTGCCACTGTTGCT 481 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 423 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGCAGTGCCACTGTCGCT 482 Query 482 AGGATAACCGAGGTTCCACCAGTTGCCTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 541 ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 483 AGGATCACCGAGGTTGCACCAGTTGCGTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 542 Query 542 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTCGCAACAGAA 601 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 543 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAACAGAA 602 Query 602 CGTGGATGGGCAATAAACATTGGAGGAGGTTTTCATCATTGTACTGCGGAAAGAGGAGGC 661 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 603 CGTGGATGGGCGATAAACATTGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGC 662 Query 662 GGATTTTGTGCTTTTGCTGATATTTCTCTTTGTATTCACTTTGCATTTCTTCGTCTGCGA 721 || ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| || Sbjct 663 GGGTTTTGTGCTTTCGCTGATATTTCTCTCTGTATTCACTTTGCGTTTCTTCGTCTGAGA 722 Query 722 ATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 781 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 ATCTCGAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 782 Query 782 CTCGGCGATGACAACCGCGTTTACATTCTGGATATGTACAATCCCGAGATATACCCTTTC 841 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 783 CTCGGCGATGACAACCGTGTTTACATTTTGGATATGTACAATCCCGAGATATACCCTTTC 842 Query 842 GATTATAGAGCTAGGAGATTTATCGACCAGAACA-TTGAGGTCGTGAGCGGGACCACCAC 900 |||||||||||||||||||||||||| ||||| | |||||||| |||||||||| ||||| Sbjct 843 GATTATAGAGCTAGGAGATTTATCGATCAGAA-AGTTGAGGTCATGAGCGGGACGACCAC 901 Query 901 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 961 Query 961 GGAGTTGGTAATTTACAATGCTGGGACAGATATATTAGACGGTGACCCTCTGGGACTTCT 1020 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 962 GGAGTTGGTAATTTACAATGCTGGCACAGACATATTAGATGGTGACCCTCTGGGACTTCT 1021 Query 1021 AAAGATAAGCCCCGATGGCATAACGAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1080 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1022 AAAGATAAGCCCCGATGGCATAACAAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1081 Query 1081 GAAAAATATTCCTCTTGTGATGCTAACTTCAGGTGGGTACATGAAGTCAAGCGCCAGAGT 1140 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 1082 GAAAAATATTCCTCTTGTGATGCTAACCTCAGGCGGGTACATGAAGTCAAGCGCTAGAGT 1141 Query 1141 TATTGCGGATTCCATTGAGAATCTCTCACGTCAAGGGTTAATCCAGACACGACCGGAATA 1200 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1142 TATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATA 1201 Query 1201 A 1201 | Sbjct 1202 A 1202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62800881795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5