BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489474
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26340.1 | Symbols: MSS1, STP13, ATSTP13 | Major facilitator... 2776 0.0
AT5G26250.1 | Symbols: | Major facilitator superfamily protein... 110 7e-23
> AT5G26340.1 | Symbols: MSS1, STP13, ATSTP13 | Major facilitator
superfamily protein | chr5:9243511-9247066 REVERSE LENGTH=1993
Length=1993
Score = 2776 bits (1503), Expect = 0.0
Identities = 1755/1873 (94%), Gaps = 32/1873 (2%)
Strand=Plus/Plus
Query 1 TCTCTTTAACTCCTTGAGAGAAAATAACTTTTATACTTTAGCTTCTGAAGATATTTTCAG 60
||| ||||||||||||||||||||||||||||| |||||||||||| |||| || |||||
Sbjct 13 TCTGTTTAACTCCTTGAGAGAAAATAACTTTTAAACTTTAGCTTCT-AAGAGATATTCAG 71
Query 61 GATGACCGGAGGAGGATTTGCAACTTCGGCGAACGGAGTGGAGTTTGAGGCAAAAATAAC 120
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 72 GATGACCGGAGGAGGATTTGCGACTTCGGCGAACGGAGTAGAGTTTGAGGCAAAGATAAC 131
Query 121 TCCTATAGTCATCATATCTTGCATCATGGCTGCTACCGGCGGCCTCATGTTTGGTTACGA 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TCCAATAGTCATCATATCTTGCATCATGGCTGCTACCGGCGGCCTCATGTTTGGTTACGA 191
Query 181 CGTTGGTGTTTCCGGCGGAGTGACATCGATGCCGGACTTTCTCGAAAAGTTTTTTCCGGT 240
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 192 CGTCGGTGTCTCCGGCGGAGTGACATCGATGCCGGACTTTCTCGAAAAGTTTTTTCCCGT 251
Query 241 GGTTTACCGGAAAGTACAAGCCGGCACCGAAAAAGACAGCAACTACTGCAAATACGACAA 300
|||||| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 252 GGTTTATCGGAAAGTAGTAGCTGGCGCCGACAAAGACAGCAACTACTGCAAATACGACAA 311
Query 301 CCAAGGGCTACAACTTTTCACATCATCTCTATACTTAGCCGGTCTAACCGCAACGTTCTT 360
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 312 CCAAGGACTACAACTTTTCACATCATCTTTATACTTAGCCGGTCTAACCGCAACGTTCTT 371
Query 361 CGCTTCATACACGACGAGGACGCGAGGACGGAGGCTAACGATGCTTATAGCCGGCGTGTT 420
|||||||||||||| || |||| ||| |||||||||| ||||| ||||||||||| ||
Sbjct 372 TGCTTCATACACGACAAGAACGCTCGGAAGGAGGCTAACTATGCTCATAGCCGGCGTTTT 431
Query 421 CTTCATCATCGGTGTGGCTCTCAACGCGGGGGCTCAAGACCTAGCCATGCTTATTGCAGG 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CTTCATCATAGGTGTGGCTCTCAACGCGGGGGCTCAAGACCTAGCCATGCTTATTGCAGG 491
Query 481 TC-GGATATTGCTTGGTTGTGGAGTTGGGTTCGCTAATCAAGCCGTTCCGTTGTTCTTGT 539
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 -CAGGATATTGCTTGGTTGTGGAGTTGGGTTCGCTAATCAAGCCGTTCCGTTGTTCTTGT 550
Query 540 CGGAGATTGCACCTACTAGGATCCGTGGTGGTCTTAATATTCTCTTTCAGCTTAACATCA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 551 CGGAGATTGCACCTACTAGGATCCGTGGTGGTCTTAATATTCTCTTTCAGCTTAACGTCA 610
Query 600 CTATTGGTATCCTCTTCGCCAATCTTGTCAACTATGGGACCGCCAAG-----AGGA---T 651
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 611 CTATTGGTATCCTCTTCGCCAATCTTGTCAACTATGGGACCGCCAAGATTAAAGGAGGTT 670
Query 652 GGGGATGGAGGTTATCGTTAGGTTTGGCGGGAA-TCCCGCACTTCTTCTAACGGTCGGAG 710
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 671 GGGGATGGAGGTTATCGTTAGGTTTGGCGGGAATTCCCGCGCTTCTTCTAACGGTCGGAG 730
Query 711 CTTTATTGGTGACGGAGACACCAAACAGTTTAGTCGAAAGAGGTCGTCTCGATGAAGGTA 770
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CTTTATTGGTGACAGAGACACCAAACAGTTTAGTCGAAAGAGGTCGTCTCGATGAAGGTA 790
Query 771 AAGCTGTTCTTCGTCGTATTCGAGGTACCGATAATGTTGAACCAGAGTTCGCTGATCTAC 830
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 791 AAGCTGTTCTTCGTCGTATTCGAGGGACCGATAATGTTGAACCAGAGTTCGCTGATCTCC 850
Query 831 TCGAAGCTAGTCGACTTGCTAAAGAAGTTAAACACCCTTTTAGAAACCTTCTTCAACGTA 890
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTGAAGCTAGTCGACTTGCTAAAGAAGTTAAACACCCTTTTAGAAACCTTCTTCAACGTA 910
Query 891 AGAATC-GTCCTCAGCTCGTCATCGCTGTCGCTTTACAGATTTTCCAACAATGTACTGGA 949
||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 911 -GAAACCGTCCTCAGCTCGTCATCGCCGTCGCTTTACAGATTTTCCAGCAATGTACTGGA 969
Query 950 ATCAACGCGATTATGTTCTACGCTCCTGTTCTGTTCAACACAGTAGGGTTTGGCAATGAC 1009
||||||||||||||||||||||| ||||||||||||| |||| |||||||||| | ||||
Sbjct 970 ATCAACGCGATTATGTTCTACGCGCCTGTTCTGTTCAGCACATTAGGGTTTGGTAGTGAC 1029
Query 1010 GCTTCTCTTTACTCTGCAGTGGTCACCGGAGCAGTCAACGTCCTCTCAACTGTAGTCTCA 1069
||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1030 GCTTCACTTTACTCAGCAGTGGTGACCGGAGCAGTCAACGTCCTCTCAACTTTAGTCTCA 1089
Query 1070 ATCTACTCCGTTGACAAAGTCGGTCGCCGTTTTCTTCTCCTTGAAGCTGGTGTCCAAATG 1129
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1090 ATCTACTCCGTTGACAAAGTCGGTCGCCGAGTTCTTCTCCTAGAAGCTGGTGTCCAAATG 1149
Query 1130 TTCTTCTCTCAAGTCGTAATTGCCATTATCCTTGGCATCAAAGTAACAGACCACT-CTAC 1188
|||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||
Sbjct 1150 TTCTTCTCTCAAGTCGTAATCGCCATTATCCTTGGCGTCAAAGTAACAGAC-ACTTCTAC 1208
Query 1189 AAATCTCTCCAAAAGTTTCGCAATTCTAGTTGTGGTAATGATCTGCACATACGTCGCTGC 1248
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1209 AAATCTCTCCAAAGGTTTCGCAATTCTAGTCGTGGTAATGATCTGCACATACGTCGCTGC 1268
Query 1249 TTTCGCTTGGTCTTGGGGACCGCTCGGGTGGTTAATCCCGAGTGAGACATTCCCTCTAGA 1308
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1269 TTTCGCCTGGTCTTGGGGACCGCTCGGGTGGTTAATCCCTAGTGAGACATTCCCTCTAGA 1328
Query 1309 GACACGTTCCGCTGGACAAAGTGTGACGGTTTGCGTTAACTTGCTCTTCACGTTCATTAT 1368
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1329 GACACGTTCCGCGGGACAAAGTGTAACGGTCTGCGTTAACTTGCTCTTCACGTTCATTAT 1388
Query 1369 CGCTCAAGCTTTCCTCTCGATGCTTTGCCATTTCAAGTTTGGAATATTCATCTTCTTTTC 1428
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1389 CGCTCAAGCTTTCCTCTCTATGCTTTGCCATTTCAAGTTTGGGATATTCATCTTCTTTTC 1448
Query 1429 GGCTTGGGTTTTGGTTATGTCTTTCTTTGTGATGTTCCTCCTTCCTGAGACTAAGAATGT 1488
|| ||||||||| |||||||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 1449 TGCATGGGTTTTGATTATGTCTGTCTTTGTGATGTTCCTACTTCCGGAGACTAAGAATAT 1508
Query 1489 GCCGATAGAGGAGATGACTGAGAGAGTGTGGAAGAAGCATTGGTTCTGGGCTAGGTTCAT 1548
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1509 TCCTATCGAGGAGATGACTGAGAGAGTTTGGAAGAAGCATTGGTTCTGGGCTAGGTTCAT 1568
Query 1549 GGATGATCATAATGATCAAGTGTTCGTGAATGGTAAGAAGAGTAATGGTAAATCTAATGG 1608
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1569 GGATGATCATAATGATCACGAGTTCGTGAATGGTGAGAAGAGTAATGGTAAATCTAATGG 1628
Query 1609 CTTTGATCCTTCAACACGGCTTTAAAGTGGTTTAAGAGTCA-TAACTTAAGTAGAAGCAG 1667
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1629 CTTTGATCCTTCAACACGGCTTTAAAGTGGTTTAAGAGTCCCTAACCAAAGTAGAAGCAG 1688
Query 1668 AAGAGAGTGAAACAAGAGGTGGTAAACACACCAAAATAGAGAAAAGGAAATACAGTTTTT 1727
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1689 AAGAGAGTGAA-CAAGAGGTGGTAAACACACCAAAGTAGAGAAG-GGAAATACAGTTTTC 1746
Query 1728 AAATTTTATACAGTGTACTAAATTTCGTTACTTTAA-----A-CTGTGTTTGTGAATAAG 1781
|| || |||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1747 AA-TTCTATACAGTGTACTAAATTTCGTTACTTTAAGTTTGAACTGCGTTTGTGAATAAG 1805
Query 1782 TGAAGTCttttttt---CTTTGTTGTGGTTCTTAATGTAATCCCCGAGTTCCA-TTT-CT 1836
|||||| ||||||| ||||||||||||||||||||| ||||| |||||||| ||| ||
Sbjct 1806 TGAAGTTTTTTTTTTTGCTTTGTTGTGGTTCTTAATGTCATCCCTGAGTTCCAATTTTCT 1865
Query 1837 CACAAGTGTGACA 1849
||||||||||||
Sbjct 1866 -ACAAGTGTGACA 1877
> AT5G26250.1 | Symbols: | Major facilitator superfamily protein
| chr5:9196758-9198801 FORWARD LENGTH=1644
Length=1644
Score = 110 bits (59), Expect = 7e-23
Identities = 112/136 (82%), Gaps = 10/136 (7%)
Strand=Plus/Plus
Query 924 TACAGATTTTCCAACAATGT-ACTGGAATCAACGCGATTATGTTCTACGCTCCTGTTCTG 982
||||| |||||||||| | | |||||||||||||||||||||||||||||||| ||| ||
Sbjct 860 TACAGTTTTTCCAACAGT-TCACTGGAATCAACGCGATTATGTTCTACGCTCCGGTTTTG 918
Query 983 TTCAACACAGTAGGGTTTGGCAATGACGCT--TCT-CTTTACTCTGCAGTGGTCACCGGA 1039
||| | || ||||||||||| |||||||| ||| |||| | | || || ||||| |||
Sbjct 919 TTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTT-C-C-GCGGTTGTCACGGGA 975
Query 1040 GC-AGTCAACGTCCTC 1054
| | ||||||| |||
Sbjct 976 ACGA-TCAACGTTCTC 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92469403890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5