BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489475 Length=2055 Score E Sequences producing significant alignments: (Bits) Value AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 3240 0.0 > AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255053-9258991 REVERSE LENGTH=2276 Length=2276 Score = 3240 bits (1754), Expect = 0.0 Identities = 1975/2078 (95%), Gaps = 29/2078 (1%) Strand=Plus/Plus Query 1 ATGCACGCACCGGTTCTCGTTCTGAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTT 60 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 ATGCACGCACCGGTACTCGTTCTGAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTT 160 Query 61 CATCATGGTAATATCCAAGCTTCCAAGGCTGTGGCTGATATCATTCGTACAACATTGGGT 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 161 CATCATGGTAATATCCAAGCTTCCAAGGCTGTTGCTGATATCATTCGTACAACATTGGGT 220 Query 121 CCTCGTTCTATGTTGAAGATGCTTCTTGATGCTAGTGGAGGGATTGTTGTTACTAATGAT 180 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 221 CCTCGTTCTATGTTGAAGATGCTTCTTGATGCTGGTGGAGGGATTGTTGTTACTAATGAT 280 Query 181 GGGAATGCTATTCTTCGTGAGCTAGATGTTGCTCATCCTGCTGCTAAGTCAATGATTGAG 240 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 281 GGGAATGCTATTCTTCGTGAGCTAGATGTCGCTCATCCTGCAGCTAAGTCAATGATTGAG 340 Query 241 TTGAGCCGTACACAAGACGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCT 300 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 341 TTGAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCT 400 Query 301 GGAGAAATGCTTCATGTTGCAGAAGCATTTATTGAGAAGAATTACCACCCCACAGTCATA 360 || ||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 401 GGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCCCACAGTCATA 460 Query 361 TGCCGAGCTTACATTAAGGCTCTCGAAGATTCAATTGCTGTTCTTGACAAAATTGCTATG 420 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 461 TGCCGAGCTTACATCAAGGCTCTCGAAGATTCTATTGCTGTTCTTGACAAAATTGCTATG 520 Query 421 TCAATTGATATCAATGACCGTTCATC-AGTGCTAGGATTAGTCAAGAGCTGCATAGGGAC 479 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 521 TCAATTGATATCAATGACCGTTCA-CAAGTGCTAGGATTAGTCAAGAGCTGCATAGGGAC 579 Query 480 AAAGTTCACTAGCCAATTTGGAGATCTAATTGCTGATTTGGCTATTGATGCCACTACTAC 539 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 580 AAAGTTCACTAGCCAATTTGGAGATCTTATTGCGGATTTGGCTATTGATGCCACTACTAC 639 Query 540 TGTTGGTGTTGATCTTGGGCAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATCAAGGT 599 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TGTTGGTGTTGATCTTGGACAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATCAAGGT 699 Query 600 TGAGAAGGTTCCTGGTGGTCAGTTTGAGGACTCGGAGGTTCTTAAAGGAGTTATGTTTAA 659 |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 700 TGAGAAAGTTCCTGGTGGTCAGTTCGAGGACTCTGAGGTTCTTAAAGGAGTTATGTTTAA 759 Query 660 CAAAGATGTCGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGATTATTCT 719 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 760 CAAAGATGTTGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGATTATTCT 819 Query 720 TCTTGACTGTCCCCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTTGGTCAG 779 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 820 TCTTGACTGTCCTCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTTGGTTAG 879 Query 780 AGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATACATTGAGAACATTTGCGT 839 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 880 AGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATATATCGAGAACATTTGCGT 939 Query 840 CCAAATACTAAAGTTCAAACCTGATTTAGTTATTACAGAAAAGGGTCTTAGTGATTTGGC 899 ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 940 TCAAATACTAAAGTTCAAGCCTGATTTGGTTATCACAGAGAAGGGTCTTAGTGACTTGGC 999 Query 900 CTGTCACTATTTCAGTAAAGCTGGGGTTAGTGCAATCCGTAGGTTGAGAAAAACTGACAA 959 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1000 CTGTCACTATTTCAGTAAAGCTGGGGTAAGTGCAATCCGAAGGTTGAGAAAAACTGACAA 1059 Query 960 CAACAGAATCGCCAAGGCTTGTGGAGCAGTGATTGTGAACAGGCCCGACGAACTGCAGGA 1019 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1060 CAACAGAATCGCCAAGGCTTGTGGAGCAGTAATTGTGAACAGGCCCGACGAACTGCAGGA 1119 Query 1020 GTCTGATATCGGTACTGGGGCTGGTTTGTTTGAGGTCAAGAAAATAGGAGATGATTTCTT 1079 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1120 GTCTGATATCGGTACTGGGGCTGGCTTGTTTGAGGTCAAGAAAATTGGAGATGATTTCTT 1179 Query 1080 TTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACCGTACTCTTAAGGGGACCAAG 1139 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1180 TTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAG 1239 Query 1140 TAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGGATGCCATGTCTGTTGCAAGAAA 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1240 TAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGGATGCCATGTCTGTTGCAAGAAA 1299 Query 1200 CATTATCAAAAACCCAAAGCTCGTCCCTGGTGGAGGAGCCACAGAGTTAACTGTTTCTGC 1259 ||||||||||||||||||||| || ||||||||||||||||||||| |||| |||||||| Sbjct 1300 CATTATCAAAAACCCAAAGCTAGTTCCTGGTGGAGGAGCCACAGAGCTAACCGTTTCTGC 1359 Query 1260 CACATTAAAACAGAAGAGTGCAACAATCGAAGGCATAGAAAAGTGGCCTTATGAAGCAGC 1319 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1360 CACATTAAAACAGAAGAGTGCAACAATTGAAGGCATAGAAAAGTGGCCTTATGAAGCAGC 1419 Query 1320 TGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAGAACTGTGGGGTTAACGTGAT 1379 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1420 TGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAAAACTGTGGGGTTAACGTGAT 1479 Query 1380 CCGTACTATGACTGCATTGCAAGGGAAGCACGCAAATGGTGAAAACGCATGGACTGGTAT 1439 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1480 CCGTACTATGACTGCATTGCAAGGGAAGCATGCAAATGGTGAAAACGCATGGACTGGTAT 1539 Query 1440 TGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGGATTCTTACAA 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1540 TGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGGATTCGTACAA 1599 Query 1500 TGTGAAGGCGCAAACTTTCAAGACGGCGATAGAAGCTGCATGTATGCTTCTAAGAATCGA 1559 ||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct 1600 TGTGAAGGCGCAAACTTTCAAGACGGCTATAGAAGCAGCGTGTATGCTTCTAAGGATCGA 1659 Query 1560 TGATATAGTGAGTGGAATCAAGAAGAAGCAAGCTCCTGGATCTGGACCTTCAAAGCCTAC 1619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1660 TGATATAGTGAGTGGAATCAAGAAGAAGCAAGCTCCTGGATCTGGACCTTCAAAGCCTAC 1719 Query 1620 CATTGAGACAGAAGGAGATGCAGACAACGAACAAATTCTCCCCGACTAAGCGAAG--AGA 1677 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1720 CATTGAGACAGAAGGAGATGCAGACAACGAACAAATTCTTCCCGACTAAGCGAAGGGAGA 1779 Query 1678 AACACTTTGGTCTCAGTGTGTAACTCAATCTCTGTTTTCACTTGTTTTATGGTTGCA-T- 1735 |||||||||||||||| | |||||||||||||||||||||||||| ||||||||| | Sbjct 1780 AACACTTTGGTCTCAGCAT--AACTCAATCTCTGTTTTCACTTGTTTAATGGTTGCACTC 1837 Query 1736 T-----CT-----C--CC-TTGACATATCTTCTAATTTTGCAATTTGACTTGGTGAGATA 1782 | || | || |||||||||||| ||||| |||| ||||||||||||||||| Sbjct 1838 TTTTGGCTATTATCTTCCCTTGACATATCTTTTAATTCTGCAGTTTGACTTGGTGAGATA 1897 Query 1783 AGATTTTTGAGGGTGCGGTTTTATT-GTCTTCTTCTG-AATGTTAGCTTTTTTGAATTTT 1840 ||||||| ||||||| | |||| || || || || || ||| |||||||||||||||||| Sbjct 1898 AGATTTTCGAGGGTG-GTTTTTTTTTGT-TTGTTTTGGAATATTAGCTTTTTTGAATTTT 1955 Query 1841 CGTAGTCACTTTGTTGGTTTTAAGAGTGCTAGTTGTTATTGTCTTGTTGAAATTTCTGGC 1900 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1956 CGTAGTCACTTTGTTGGTTTTTAGAGTGCTAGTTGTTATTGTCTTTTTGAAATTTCTGGC 2015 Query 1901 ACTAGAGACtttttttAGTTTGTGACGTTTTTGTTTGAATATCATCAA--A-GTACTTCG 1957 ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||| Sbjct 2016 ACTAGAGACTTTTTT-AGTTTGTGTCGTTTTTGTTTGAATATCATCAAGTATGTACTTCA 2074 Query 1958 ACGGGATCTTAAGTTGACCGTTTAGTCTCAAAATGTGTTTTTGTTTGAACACCATTAATT 2017 || ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 2075 ACTGGATCTTTAGTTGACCGGTTAGTGTCAAATTGTGTTTTTGTTTGAACACCATTAATT 2134 Query 2018 GCATTTCAGACGTACGGATCGGTTTTTTAGAGTGTTGG 2055 |||||||||||||||||||| ||| |||||||| |||| Sbjct 2135 GCATTTCAGACGTACGGATCTGTTATTTAGAGTTTTGG 2172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101856905805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5