BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489514
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26820.1 | Symbols: ATIREG3, MAR1, RTS3, IREG3 | iron-regula... 3001 0.0
> AT5G26820.1 | Symbols: ATIREG3, MAR1, RTS3, IREG3 | iron-regulated
protein 3 | chr5:9433619-9437105 FORWARD LENGTH=2136
Length=2136
Score = 3001 bits (1625), Expect = 0.0
Identities = 1793/1876 (96%), Gaps = 3/1876 (0%)
Strand=Plus/Plus
Query 158 GAGAAGAATCAATTT-TCAGAATGGTTGTTTCCATGGCTTTGGTCAGACATTCCCCGTCT 216
||| ||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 220 GAGGAGAATCAATTTAT-AGAATGGTTGTTTCAATGGCTTTGGTCAGACATTCTCCGTCT 278
Query 217 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGTCGTTTTCTATCGCCGGTGGCTTTT 276
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 279 TTCGATTTTCTGTTTCATTTTCCGGTCGACAGAAGCCGTTTTCTATCGCCGGTTGCTTTT 338
Query 277 TCTAGAGTTCGCTATCATCGGTTCCCTTCTTGTAGATGGTTAAGTCTCAGCTCATCACCT 336
||||| |||||||||||||| |||| |||||||||||||||||||||| |||| ||||||
Sbjct 339 TCTAGCGTTCGCTATCATCGCTTCCATTCTTGTAGATGGTTAAGTCTCCGCTCTTCACCT 398
Query 337 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTATAAACACTGATGTA 396
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 399 TCATGTTCTCGCAGGTTAAACAGTTTTAGTTCGAGGTGTTCGATTACAAACACTGATGTA 458
Query 397 TGTCACGATTTTGTCACTACTGATGATGGCATTCACGAGGATTTGCTTGCTCCAATTGAG 456
|||||||| ||||| ||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 459 TGTCACGAATTTGTGACTACTGATGATGAAATCCACGAGGATTTGCTTACTCCAATTGAG 518
Query 457 GATCATACAATTCCCATTGTTCATATCGATACCAATATCGCCGTTACTGAATCGCTGAGC 516
|||||| ||||||| ||||||||| | |||||||||||| ||||||||||||| |||| |
Sbjct 519 GATCATTCAATTCCTATTGTTCATCTTGATACCAATATCTCCGTTACTGAATCTCTGACC 578
Query 517 TTACTCACCGAGTGTACTTACGTAGATACCGTTTTAACCGCATTGCCTGTATTGTCTGAG 576
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 579 TTACTCACCGAGTGTACTTACGTAGATACTGTTTTAACAGCATTGCCTGTATTGTCTGAG 638
Query 577 GAGGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGGTTATATGTCTTATAT 636
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 639 GAAGAGCAGACTGTAATTGCAGCCACTCCTGCTCACCCTGAAGGATTATATGTCTTATAT 698
Query 637 GCAAGTTGTTTGGTTGGGAATTTGGTTGAACAACTTTGGAATTTCGCTTGGCCTTCCGCC 696
||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 699 GCAAGTTGTTTGGTTGGAAATTTGGTTGAGCAACTTTGGAATTTTGCTTGGCCGTCCGCC 758
Query 697 ATTGCGATGCGACATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTTACTAAATTG 756
||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 759 ATTGCAATGCTATATCCGAGCTTACTACCTGTGGCAGTCATGGGGTTTGTCACTAAATTG 818
Query 757 GCGATAATTGCTGGGGGTCCAGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 816
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 819 GCGATAATTGCTGGAGGCCCTGTGGTTGGAAAGTTTATGGATTATAGTCCGAGAGTTCCT 878
Query 817 ACGTATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGGTATCTGCAGGAATGATT 876
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 879 ACATATATCTCGTTGAATGTCATTCAGGCAGCCGCTCAAGTGCTATCTGCAGGAATGATA 938
Query 877 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTTCAGCCTTGGTTT 936
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 939 ATTCATGCATACACGGTTCCTTCCACATCGGCGTCATCAATTCTTCTGCAGCCTTGGTTT 998
Query 937 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTTGCATTGTTATTCGCAGGGGCCATTGACAGTCTATGTGGAATAGCATCTGGAGTCGCC 1058
Query 997 ATTGAACGTGATTGGGTCGTATTGTTGGCGGGCATAAACAGACCAATCGCTCTTGCACAA 1056
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1059 ATTGAACGTGATTGGGTTGTATTGTTGGCCGGCATAAACAGACCAATCGCTCTTGCTCAA 1118
Query 1057 GCAAATGCTGTTCTCCACCGAATAGATCTGCTTTGCGAGATCGCTGGGACCATGTTATTT 1116
|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1119 GCAAATGCTGTTCTCCACAGAATAGATCTGCTTTGCGAGATAGCTGGGACGATGTTATTT 1178
Query 1117 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GGCATTCTCCTATCCAAATATGACCCTGTGACCTGCTTAAAGTTTGCTGCCACACTAATG 1238
Query 1177 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCTTCTGGA 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1239 GTGGGTTCTTTGCCAACCATGACAGCTCTTATATGGCTGACCAACAAGTTCTCCTCTGGA 1298
Query 1237 GTTCTGGACCGTCCTAAATGCTCCCTGAGCAGCTGTTCTGCCGAAGGACCTCGTACTAAT 1296
|||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||
Sbjct 1299 GTTCTGGACCGTCCTAAATGCTCCTTGAACAGCTGTTCTGCTGAAGGATCTCGTACTAAT 1358
Query 1297 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 ACCGACAGTATTTTTGATATTGGCATGGAAACTATCAAGCTCGGATGGAAAGAATATATT 1418
Query 1357 CAACAGCCAGTTCTTCCTGCTAGCCTTGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1419 CAACAGCCAGTTCTTCCTGCTAGCCTCGCATATGTCCTTCTCTACTTTAACATCGTCCTC 1478
Query 1417 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ACCCCAGGCAGCTTGATGACTGCATTTCTAACACAACGATGTGTGAATCCATCAGTTATT 1538
Query 1477 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTTGCCGCAACCTTCTTATCAGCAAAC 1536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1539 GGTGGTTTCAGTGGATTATGCGCTGTTATGGGCGTCGCCGCAACCTTCTTATCAGCAAAC 1598
Query 1537 TTGGTCAAACGCGTTGGCATTCTGAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1596
||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1599 TTGGTCAAACGAGTTGGCATTTTAAAGGCGGGTGCAGTAGGATTGTTTTTCCAAGCTTCA 1658
Query 1597 CTTCTTGCTGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCAGAAAAGCCCACTC 1656
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1659 CTCCTTGCCGTTGCTGTTGCTGTGTATTGTAGCTCTTCTCTATCCCATAAAAGCCCACTC 1718
Query 1657 TTCTTCTTCTTGTCCATGATCGTATTATCGAGGTTAGGTCACATGTCTTACGGCGTTGTG 1716
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1719 TTCTTCTTCTTGTCCATGATCGTATTATCAAGGCTAGGTCACATGTCTTACGGCGTTGTG 1778
Query 1717 GGAGCTCAGATTCTCCAAACCGGAATTCCATCGTCCAAGGCTAATCTCATCGGTGCAACA 1776
|||||||| || || |||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1779 GGAGCTCAAATACTTCAAACCGGCATTCCATCATCCAAGGCTAATCTCATCGGCGCAACG 1838
Query 1777 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTGATGCTCGGAGTAGCCATAGCGGCAAAT 1836
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1839 GAGATCTCAGTGGCAAGTCTAGCTGAATCGCTTATGCTCGGAGTAGCCATAGCGGCGAAT 1898
Query 1837 GACGCTTCCCATTTCGGGTTTCTTGCAGTTCTGTCTCTTTTATCAGTTGTTGCAGCCTCT 1896
||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1899 GACGCTTCCCATTTCGGGTTTCTCGCGGTTCTGTCTCTTTTATCAGTTGTTGCGGCCTCA 1958
Query 1897 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 TTGATATTCTGCAGATTGCTGAGAAATCCCACTGATGAACAAAGACGACTCTTCTCCTTC 2018
Query 1957 GACCCTCTTTCAAATTGATTTGGAGCTTTTACATAGAAATATTTTGTATAGTAGTCTCAC 2016
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 2019 GACCCTCTCTCAAATTGATTTGGAGCTTTTACATTGAAATATTT-GTATAGTAGTTTCAC 2077
Query 2017 TTTCAGTGTATAAATT 2032
||||||||||||||||
Sbjct 2078 TTTCAGTGTATAAATT 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100802694360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5