BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489571
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27560.1 | Symbols: | Domain of unknown function (DUF1995) ... 1659 0.0
> AT5G27560.1 | Symbols: | Domain of unknown function (DUF1995)
| chr5:9731602-9733918 FORWARD LENGTH=1456
Length=1456
Score = 1659 bits (898), Expect = 0.0
Identities = 1103/1196 (92%), Gaps = 37/1196 (3%)
Strand=Plus/Plus
Query 1 GATTTGCCAAAGGCTTGCATCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTA- 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GATTTGCCAAAGGCTTGCCTCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTAT 195
Query 60 --TCTCCATCGTTGTTCGTTCTCCACCACCCAATTTTTCGCGGGTTCTCTCTCTTGCGGC 117
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 196 CTTCTCCATCGTTGTTCGTTCTCCACCACACAATTTTTCTCGGGTTCTCTCTCTTGTGGC 255
Query 118 TTCTCTGCTTCTAGCAATTCGAGACTAAGAACATGTGTCAAATTCGACAAGTTTCAGGGT 177
||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 256 TTCTCTGCTTCTACCAATTCAAGACTAAGAACATGTGTCAAATTCGAGAAGTTTCAGGGT 315
Query 178 GACTCTCCTCTTGAACCGACCACATCAGTTTCTACTT-C-C-TCTGTTTCCCAAGAACTA 234
|||||||||||||||| || ||| ||||||||| ||| | | |||||||| || ||||||
Sbjct 316 GACTCTCCTCTTGAACAGAACACTTCAGTTTCTTCTTCCTCTTCTGTTTCACAGGAACTA 375
Query 235 CCATTAGAAGAAGAAGCTCAAGACCAACTAGAAGACGATG-AGTTCAGTAATTTCTGTTT 293
||||| ||||||||||||||||||||||||||| || | || | | | || ||||||
Sbjct 376 CCATT---AGAAGAAGCTCAAGACCAACTAGAAGAAGAAGAAGATGA-TGATGACTGTTT 431
Query 294 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 491
Query 354 CTCAGGAGGAACA-AGAGCTATTGTGGAGCTCTTAATTCCCCAGCTGCAGTTTTTAGATG 412
||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 492 CTCAGGAGGAA-ATAGAGCTATTGTGGAGCTTTTGATTCCTCAGCTGCAGTTTTTAGACG 550
Query 413 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 610
Query 473 AAGAAACAGGTTGTGAGAGAGTTAAAGCCGTATTTCCAGATGCTGGAGCTGCTGCATTGC 532
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 611 AAGAAACAGGTTGTGAGAGAGTTAAAGCTGTATTTCCAGACGCTGGAGCTGCTGCATTGC 670
Query 533 TAAAATACCGGTGGAAAGATGCAACGTTTGGATTTGCTAGCTTAAGTGACAGGAAACCAG 592
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 671 TAAAATACCGGTGGAAAGATGCAACGTTCGGATTTGCTAGCTTAAGTGACCGGAAACCTG 730
Query 593 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGACTACCAAATGCTGGAATATG 652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 731 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGATTACCAAATGCTGGAATATG 790
Query 653 TTGAGAAAATTGCAAAAGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 712
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TTGAGAAAATTGCTAATGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 850
Query 713 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGGTACT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 851 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGTTACT 910
Query 773 TCCTAAGTTCTTTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 832
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TCCTAAGTTCATTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 970
Query 833 GGTGTTACCCCGGTAAATGGAAAGTCTTCTATGATAATAAAGACAGACCAGGGCGGTACC 892
||||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||
Sbjct 971 GGTGTTATCCTGGTAAGTGGAAAGTCTTCTATGATAACAAAGACAGACCAGGCCGATACC 1030
Query 893 TACTCGCCAAGGAACTCATTGGTCGGCCTGATGCTGAGGATCTTGAGATAATATATGGGG 952
||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1031 TACTCGCTAAAGAACTCATTGGTCGACCTGATGCAGAGGATCTTGAGATAATATATGGGG 1090
Query 953 GCGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTATTGAGTCAAGCTGCTGGAATTTTCT 1012
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1091 GAGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTAATGAGTCAAGCTGCTGGAATTTTCT 1150
Query 1013 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATATCTTCTCTGCA-TG------ 1065
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1151 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATTTCTTCTCTGCAGTGTAATAC 1210
Query 1066 ---------GT------ATTAGAATTGTAACCAAAGGGTAT-ACTGTATATCTTTGTATG 1109
|| ||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 1211 TATTCACATGTCCTGGTATTAGAAATGTAACCAAAGGGTATTACTGTATATCTTTCTATG 1270
Query 1110 CTATTACACCATGATGAGTATATCTTTGTACTCGTAAAAAGTTCTGTTCCTTCTAT 1165
|||||||| ||||| ||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1271 CTATTACATCATGAAGAGTATAA-TACGTACTGGTAAAGAGTTCTGTTCCTTCTAT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5