BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489579

Length=1573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA ...  2431    0.0  


> AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA 
ligase | chr5:9695008-9697389 FORWARD LENGTH=1670
Length=1670

 Score = 2431 bits (1316),  Expect = 0.0
 Identities = 1499/1585 (95%), Gaps = 22/1585 (1%)
 Strand=Plus/Plus

Query  1     CAAATTTCTGTTTCTGCTTTTGATTCACAGAGAAAGAGCCCGAAA-ATGTTGGATATCAA  59
             ||||||||||| |||||||||||||||||||||| ||||  |||| ||||||||||||||
Sbjct  34    CAAATTTCTGTGTCTGCTTTTGATTCACAGAGAAGGAGCAGGAAAGATGTTGGATATCAA  93

Query  60    TCTATTTCGTGAAGAAAAAGGGAACAATCCGGAGATTATCAGAGAATCGCAACGCCGGAG  119
             ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct  94    TCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGCAACGCCGGAG  153

Query  120   ATTTGCCAGCGTTGAAGTCGTGGATGAGATCATTAAACTCGACAAAGAATGGCGTCAGCG  179
             |||||||||||||||| |||| |||||||||||||| || ||||| ||||||||||||||
Sbjct  154   ATTTGCCAGCGTTGAAATCGTCGATGAGATCATTAAGCTGGACAAGGAATGGCGTCAGCG  213

Query  180   TCAATTTGAAGTTGATAGCTTCAGGAAA-GAGTTCAACAAGCTCAATAAGCAAGTGGCGC  238
             ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct  214   TCAATTTGAAGTTGATAGCTTCA-GAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC  272

Query  239   AGCTCAAAATTAAAAAAGAAGATGCCACTGAGATTATTCAACAGACCGAGAAAAACAAAC  298
             ||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct  273   AGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAAC  332

Query  299   AAGATTCTACCGCAAAGGAGGCGGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT  358
             |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  333   AAGATTCTACTGCAAAGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT  392

Query  359   TGGAGAC-AGTTGGTAACTTGATTCATGACTCTGTTCCTA-TTGATAAGGACGAGGCTAA  416
             ||||| | ||||||||| ||| | ||||| |||||||| | |||||||||||||||||||
Sbjct  393   TGGAG-CAAGTTGGTAATTTGGTCCATGATTCTGTTCC-AGTTGATAAGGACGAGGCTAA  450

Query  417   TAATCTTGTCATTAAACTGTGGGGTGAAAAGCGGCTTTCTACGCCTGGTCTGAAGCTGAA  476
             ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  451   TAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA  510

Query  477   AAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT  536
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  511   AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT  570

Query  537   CGCTGGAGCCAGAGGCTTTTTCTTAAAAGGAGATGGATTGATGCTTAACCAAGCTCTTAT  596
             ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  571   CGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTAT  630

Query  597   CAACTTTGGGCTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAGCCTCCTTTTTT  656
             |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  631   CAACTTTGGGTTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTT  690

Query  657   CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA  716
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  691   CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA  750

Query  717   CAAGGTGACTGGTGAAGGAGATGACAAATACCTTATTGCAACTGCTGAGCAGCCTCTTTG  776
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  751   CAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG  810

Query  777   TGCATACCATCTTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA  836
             ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  811   TGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA  870

Query  837   CTCGTCCTGCTTTAGAAAAGAAGCTGGTTCGCATGGAAGAGACACTCTTGGTATTTTCCG  896
             ||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct  871   CTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG  930

Query  897   TGTTCACCAGTTTGAGAAGATTGAACAGTTTTGCATCACCAGTCCTAATGAGAATGCCTC  956
             |||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||
Sbjct  931   TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC  990

Query  957   GTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAAGCGCTAAAGCT  1016
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  991   GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCTAAAACT  1050

Query  1017  TCCATACCAAATCGTGTCGATAGTCTCTGGAGCATTGAACGATGCAGCAGCCAAAAAGTA  1076
             ||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct  1051  TCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAGTA  1110

Query  1077  TGACTTGGAAGCTTGGTTTCCTTCGTCGGAGACTTTCAGAGAGCTTGTGTCCTGTTCCAA  1136
              || ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct  1111  CGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTCAGGGAGCTTGTGTCTTGTTCCAA  1170

Query  1137  CTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATACGGTCAGAAAAAGAGCAATGA  1196
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  1171  CTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAGCAATGA  1230

Query  1197  GCAGACAAAGCAGTATGTGCATATGCTGAATTCAACACTTACTGCAACAGAGAGGACCAT  1256
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1231  GCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACTGCAACAGAGAGGACCAT  1290

Query  1257  TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATCCCTGAGGTTCTGCA  1316
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1291  TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGGTTCTGCA  1350

Query  1317  GCCGTTTATGGGTGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC  1376
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1351  GCCGTTTATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC  1410

Query  1377  CAAAGGGAAGAAATCGAAAGCTTAATTG-T-TAT--ATT-ATGATTAACGACTCTTCTGT  1431
             ||||||||||||||||||||||| |||| | |||  ||| | ||||||||||||||||||
Sbjct  1411  CAAAGGGAAGAAATCGAAAGCTTGATTGATGTATTGATTCA-GATTAACGACTCTTCTGT  1469

Query  1432  TTTCTTGAAATTGATGAAACACTTCGATAAAGTTTCTTTATTTTGTGGAATCGTTTTTGG  1491
             ||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||
Sbjct  1470  TTTCTTGAAATTGATGAAACACTTCGATAAA-TTTCTTTACTTTGTGGAATT-TTTTTGG  1527

Query  1492  A-TTCCTGTTATTTTACCAGGACCTTTTATTTATCATCTGATTTCTTG-TAGTAGTTT-T  1548
             | ||| |||||||||||||||||| || |||||||||||||||||| | ||||| ||| |
Sbjct  1528  ACTTC-TGTTATTTTACCAGGACCGTT-ATTTATCATCTGATTTCT-GCTAGTA-TTTGT  1583

Query  1549  TCCTTTTCTTTGGCGAATCATTGTT  1573
             ||||||| |||||||||||||||||
Sbjct  1584  TCCTTTTGTTTGGCGAATCATTGTT  1608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77660243115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5