BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489579 Length=1573 Score E Sequences producing significant alignments: (Bits) Value AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 2431 0.0 > AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695008-9697389 FORWARD LENGTH=1670 Length=1670 Score = 2431 bits (1316), Expect = 0.0 Identities = 1499/1585 (95%), Gaps = 22/1585 (1%) Strand=Plus/Plus Query 1 CAAATTTCTGTTTCTGCTTTTGATTCACAGAGAAAGAGCCCGAAA-ATGTTGGATATCAA 59 ||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct 34 CAAATTTCTGTGTCTGCTTTTGATTCACAGAGAAGGAGCAGGAAAGATGTTGGATATCAA 93 Query 60 TCTATTTCGTGAAGAAAAAGGGAACAATCCGGAGATTATCAGAGAATCGCAACGCCGGAG 119 ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 94 TCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGCAACGCCGGAG 153 Query 120 ATTTGCCAGCGTTGAAGTCGTGGATGAGATCATTAAACTCGACAAAGAATGGCGTCAGCG 179 |||||||||||||||| |||| |||||||||||||| || ||||| |||||||||||||| Sbjct 154 ATTTGCCAGCGTTGAAATCGTCGATGAGATCATTAAGCTGGACAAGGAATGGCGTCAGCG 213 Query 180 TCAATTTGAAGTTGATAGCTTCAGGAAA-GAGTTCAACAAGCTCAATAAGCAAGTGGCGC 238 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 214 TCAATTTGAAGTTGATAGCTTCA-GAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC 272 Query 239 AGCTCAAAATTAAAAAAGAAGATGCCACTGAGATTATTCAACAGACCGAGAAAAACAAAC 298 ||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||||| Sbjct 273 AGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAAC 332 Query 299 AAGATTCTACCGCAAAGGAGGCGGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 358 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 333 AAGATTCTACTGCAAAGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 392 Query 359 TGGAGAC-AGTTGGTAACTTGATTCATGACTCTGTTCCTA-TTGATAAGGACGAGGCTAA 416 ||||| | ||||||||| ||| | ||||| |||||||| | ||||||||||||||||||| Sbjct 393 TGGAG-CAAGTTGGTAATTTGGTCCATGATTCTGTTCC-AGTTGATAAGGACGAGGCTAA 450 Query 417 TAATCTTGTCATTAAACTGTGGGGTGAAAAGCGGCTTTCTACGCCTGGTCTGAAGCTGAA 476 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 451 TAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA 510 Query 477 AAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 536 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 570 Query 537 CGCTGGAGCCAGAGGCTTTTTCTTAAAAGGAGATGGATTGATGCTTAACCAAGCTCTTAT 596 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 571 CGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTAT 630 Query 597 CAACTTTGGGCTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAGCCTCCTTTTTT 656 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 631 CAACTTTGGGTTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTT 690 Query 657 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 750 Query 717 CAAGGTGACTGGTGAAGGAGATGACAAATACCTTATTGCAACTGCTGAGCAGCCTCTTTG 776 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 751 CAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG 810 Query 777 TGCATACCATCTTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 836 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 TGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 870 Query 837 CTCGTCCTGCTTTAGAAAAGAAGCTGGTTCGCATGGAAGAGACACTCTTGGTATTTTCCG 896 ||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 871 CTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG 930 Query 897 TGTTCACCAGTTTGAGAAGATTGAACAGTTTTGCATCACCAGTCCTAATGAGAATGCCTC 956 |||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||| Sbjct 931 TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC 990 Query 957 GTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAAGCGCTAAAGCT 1016 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 991 GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCTAAAACT 1050 Query 1017 TCCATACCAAATCGTGTCGATAGTCTCTGGAGCATTGAACGATGCAGCAGCCAAAAAGTA 1076 ||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||| Sbjct 1051 TCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAGTA 1110 Query 1077 TGACTTGGAAGCTTGGTTTCCTTCGTCGGAGACTTTCAGAGAGCTTGTGTCCTGTTCCAA 1136 || ||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 1111 CGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTCAGGGAGCTTGTGTCTTGTTCCAA 1170 Query 1137 CTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATACGGTCAGAAAAAGAGCAATGA 1196 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1171 CTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAGCAATGA 1230 Query 1197 GCAGACAAAGCAGTATGTGCATATGCTGAATTCAACACTTACTGCAACAGAGAGGACCAT 1256 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1231 GCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACTGCAACAGAGAGGACCAT 1290 Query 1257 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATCCCTGAGGTTCTGCA 1316 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1291 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGGTTCTGCA 1350 Query 1317 GCCGTTTATGGGTGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1376 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1351 GCCGTTTATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1410 Query 1377 CAAAGGGAAGAAATCGAAAGCTTAATTG-T-TAT--ATT-ATGATTAACGACTCTTCTGT 1431 ||||||||||||||||||||||| |||| | ||| ||| | |||||||||||||||||| Sbjct 1411 CAAAGGGAAGAAATCGAAAGCTTGATTGATGTATTGATTCA-GATTAACGACTCTTCTGT 1469 Query 1432 TTTCTTGAAATTGATGAAACACTTCGATAAAGTTTCTTTATTTTGTGGAATCGTTTTTGG 1491 ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| Sbjct 1470 TTTCTTGAAATTGATGAAACACTTCGATAAA-TTTCTTTACTTTGTGGAATT-TTTTTGG 1527 Query 1492 A-TTCCTGTTATTTTACCAGGACCTTTTATTTATCATCTGATTTCTTG-TAGTAGTTT-T 1548 | ||| |||||||||||||||||| || |||||||||||||||||| | ||||| ||| | Sbjct 1528 ACTTC-TGTTATTTTACCAGGACCGTT-ATTTATCATCTGATTTCT-GCTAGTA-TTTGT 1583 Query 1549 TCCTTTTCTTTGGCGAATCATTGTT 1573 ||||||| ||||||||||||||||| Sbjct 1584 TCCTTTTGTTTGGCGAATCATTGTT 1608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77660243115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5