BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489636
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5... 1552 0.0
AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2 | ... 1149 0.0
> AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5:10030406-10032451
REVERSE LENGTH=1107
Length=1107
Score = 1552 bits (840), Expect = 0.0
Identities = 936/983 (95%), Gaps = 3/983 (0%)
Strand=Plus/Plus
Query 1 ACAGACAAACATGGAAGACAGAATTTCTTTGATCAAGAACGATGTCACTGAATTGATTGG 60
||| || |||||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct 39 ACAAACCAACATGGAAGACCG--CGTC-TTGATCAAGAACGATGTCACTGAATTGATAGG 95
Query 61 TAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCGTATTGCTGC 120
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 96 TAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATTGCTGC 155
Query 121 CAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGACAGAATTGCATATAGTATGAT 180
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 156 CAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGTATGAT 215
Query 181 CAAAGATGCAGAAGAAAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGGCGAC 240
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 216 CAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAGGCAAC 275
Query 241 GGGTGGTAATACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGTGAT 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGTGAT 335
Query 301 CCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATCATTCTGAGAGCATTAGGTGC 360
||||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 336 CCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTCTAAGAGCATTAGGTGC 395
Query 361 AGAGGTTCATCTCACTGACATGAGTATAGGTATTAAAGGACAGTTGGAGAAAGCTAAAGA 420
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 396 AGAGGTTCATCTCACTGACATTAGCATAGGCATTAAAGGACAGTTGGAGAAAGCTAAAGA 455
Query 421 GATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTTATAAATCCTGAAAACCC 480
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 456 GATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTTATTAATCCTGAAAATCC 515
Query 481 CGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAAGTAGA 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AGAGATTCATTATAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAAGTAGA 575
Query 541 TATCTTGGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTCCTTAA 600
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 TATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTTCTTAA 635
Query 601 AGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTACTCAG 660
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 636 AGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCGGTACTCAG 695
Query 661 CGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGAAATTCCAACCAA 720
||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 696 CGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATTCCAGCCAA 755
Query 721 TTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACAGGTGAGGAAGCTATTGAAAC 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 756 TTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATTGAAAC 815
Query 781 AGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCCTCAGC 840
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCCTCAGC 875
Query 841 AGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGTGGTTAT 900
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 876 TGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCATTGTGGTTAT 935
Query 901 TTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGATATGA 960
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGATATGA 995
Query 961 AGCTGAGAATTTGCCAGTCGAAT 983
|||||||||||||||||| ||||
Sbjct 996 AGCTGAGAATTTGCCAGTTGAAT 1018
> AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2
| chr5:10026183-10028531 REVERSE LENGTH=1549
Length=1549
Score = 1149 bits (622), Expect = 0.0
Identities = 865/982 (88%), Gaps = 17/982 (2%)
Strand=Plus/Plus
Query 1 ACAGACAAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGAATTGATTG 59
|||||| ||||||||||| | | | | ||||||||||||||| |||||||||||||||
Sbjct 356 ACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGAATTGATTG 411
Query 60 GTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCGTATTGCTG 119
|||||||||||||||||||||| || || |||| |||| ||||||||| ||||| ||||
Sbjct 412 GTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGCTG 471
Query 120 CCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGACAGAATTGCATATAGTATGA 179
| ||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||
Sbjct 472 CGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTATAGTATGA 531
Query 180 TCAAAGATGCAGAAGAAAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGGCGA 239
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 532 TCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGATAGAGCCAA 591
Query 240 CGGGTGGTAATACCGGGATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGGTTATAAAGTG 298
| | |||||| ||||||||||||||||| |||| ||| ||| ||||||| |||||||||
Sbjct 592 CTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGGCTATAAAGTG 650
Query 299 ATCCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATCATTCTGAGAGCATTAGGT 358
|||||| |||||||| |||| |||||||||||||| |||||||||||||| ||| |||||
Sbjct 651 ATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGCACTAGGT 710
Query 359 GCAGAGGTTCATCTCACTGA-CATGAGTATAGGTATTAAAGGACA-GTTGGAGAAAGCTA 416
|||||| |||||||| | || || | | ||||| |||||||| | |||||||||| ||
Sbjct 711 GCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTGGAGAAAACTG 768
Query 417 AAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-ATAAATCCTGAA 475
||| ||| |||||||||||||||||||||||||| ||||| || ||| | |||||||| |
Sbjct 769 AAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA-AAATCCTGCA 827
Query 476 AACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAA 535
|||||||||||||||||| |||||||||| ||||| || |||||||||||||| ||||||
Sbjct 828 AACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGGGAAA 887
Query 536 GTAGATATCTTGGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTC 595
|||||||| |||||||| || || || ||||||||||| | ||||||| ||||||||||
Sbjct 888 GTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAAGTTC 947
Query 596 CTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTA 655
|| || || ||||||||||||| |||||||||||||||||||| | |||||| |||||
Sbjct 948 CTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCCGGTA 1007
Query 656 CTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGA-AATTCC 714
|| |||||||| ||||||||||||||||||| || ||||||||||||||| | | ||
Sbjct 1008 CTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGT-ATCGTCCC 1066
Query 715 AACCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACAGGTGAGGAAGCTAT 774
| |||||||||||||| ||||||||||||||| ||||||||| ||||||| || |||||
Sbjct 1067 ATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGCTAT 1126
Query 775 TGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGC 834
||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 1127 TGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGGAGC 1186
Query 835 CTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGT 894
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1187 CGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCATTGT 1246
Query 895 GGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTC-AGTCA 953
||| ||||||| ||||||||||||||||||||||||||| || ||||||| || | | |
Sbjct 1247 GGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGATT-A 1305
Query 954 GATATGAAGCTGAGAATTTGCC 975
|||||||||| |||||||||||
Sbjct 1306 GATATGAAGCAGAGAATTTGCC 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5