BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489639 Length=1004 Score E Sequences producing significant alignments: (Bits) Value AT5G28050.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1242 0.0 > AT5G28050.2 | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:10043914-10045882 REVERSE LENGTH=1053 Length=1053 Score = 1242 bits (672), Expect = 0.0 Identities = 756/795 (95%), Gaps = 11/795 (1%) Strand=Plus/Plus Query 212 TGGAAGCAAAAGACGGTACCATCTCCGTGGCTTCTGCATTTTCCGGTCACCAACAAGCTG 271 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 217 TGGAAGCAAAAGATGGTACCATCTCCGTAGCTTCTGCATTTTCCGGTCACCAACAAGCTG 276 Query 272 TGCACGACAGCGACCACAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTTG 331 | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 277 TTCACGATAGCGACCATAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTGG 336 Query 332 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAA-AGATGAGGTTGTCGCT 390 ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 337 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAATA-ACGAGGTTGTCGCT 395 Query 391 AGCTGCCACAATATGGTTTTGAAATATACAGACCCAACTGCCCATGCTGAAGTCACCGCC 450 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 396 AGCTGCCACAATATGGTTTTGAAATATACTGACCCAACTGCACATGCTGAAGTCACTGCC 455 Query 451 ATTAGAGAGGCATGCAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTATGCA 510 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 456 ATTAGAGAGGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCA 515 Query 511 TCTTGTGAGCCGTGTCCCATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 570 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 516 TCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 575 Query 571 GTTTATGGAGCCAAAGCCGAAGCAGCCATAGCCATCGGGTTTGATGACTTCATCGCTGAT 630 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 576 GTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGAT 635 Query 631 GCTTTGAGAGGCACCGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 690 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 636 GCTTTGAGAGGCACGGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 695 Query 691 AATGGTGCCGCTATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 750 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 AATGGCGCTGCGATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 755 Query 751 TAAAG-ATCTTCTCCATTACCACAttcttcttcttcttcttctCCTTCATGATGGTAATT 809 ||||| | |||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 756 TAAAGCA-CTTCTCCATTACCACATTCTTCTTCTTCTTCT-C-C-TTCATGATGGTAATT 811 Query 810 AGAAGTAGTAGAAGAAGAAATGCACTTGCTTTAACTAAAATAAATCTTTGTTTCAAATTA 869 ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| Sbjct 812 AGAAGTAGTAGAAGAAGAACTGCACTTGCTTTAACTTAAATAAATCTCTGTTTCAAATTG 871 Query 870 TTCATTTTaaaaacagaaggaaaagaaaaaaagaaaaaCTCAATTTCGGTTCTTGTTGAC 929 ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| Sbjct 872 TTCATTTTAAAAACAGAAGGAAACGAAAAAAA-AAA---TCAATTTCGGTTCTTGTTGAC 927 Query 930 ATGCTTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTTTCTGTCA 989 | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 928 ACGATTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTCTCTGTCA 987 Query 990 AAATCTTTATTTTCT 1004 ||||||||||||||| Sbjct 988 AAATCTTTATTTTCT 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49179229913 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5