BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489647
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28300.1 | Symbols: | Duplicated homeodomain-like superfami... 2994 0.0
> AT5G28300.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:10292651-10295283 REVERSE LENGTH=2180
Length=2180
Score = 2994 bits (1621), Expect = 0.0
Identities = 2032/2213 (92%), Gaps = 98/2213 (4%)
Strand=Plus/Plus
Query 1 AATAAACAATAACTATTCATTAATGGCTT-AATACCAACCACAGATATTTTACTTTTAAA 59
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1 AATAAACAATAACTATTCATTAATGG-TTAAATACCAACCACAGATATTTTATTTTTAAA 59
Query 60 -ATATA-AACATCTAGCCCTCaaaaatgaaaaataaaaaatagcaatataaaaagagaga 117
| ||| || ||| |||||| |||||| | || ||||||||||||||||||||||||||
Sbjct 60 TAAATATAAGGTCTTGCCCTC-AAAATG-ACAA-AAAAAATAGCAATATAAAAAGAGAGA 116
Query 118 ct-aaaaagagagagaaaagagagatttcgatgtgaa-taaataagaa-acataaagaat 174
|| |||||||||| ||||||||||||||||||||||| ||| ||||| | || ||||||
Sbjct 117 CTAAAAAAGAGAGTGAAAAGAGAGATTTCGATGTGAACAAAAAAAGAAGA-AT-AAGAAT 174
Query 175 aaaag-aaatGTTTGATGGTGGAGTACCGGAGCAGATCCACCGGTTCATAGCATCTCCAC 233
||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 175 AAAAGAAAATGTTTGATGGTGGAGTACCTGAGCAGATCCACCGTTTCATAGCTTCTCCAC 234
Query 234 CGCCGCCTCCTCCGCTTCCGCCGCATCAACCGGCGGCTGAAAGATCACTCCCTTTTCCTG 293
|||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 235 CGCCACCGCCTCCGCTTCCGCCGCATCAACCGGCGGCGGAAAGATCACTACCTTTTCCTG 294
Query 294 TCTCATTCTCTTCCTTTAACACCAATCATCAAGCTCAGAATATGTTGAGCCTT-GATAGC 352
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||
Sbjct 295 TCTCATTCTCTTCCTTTAACACCAATCATCAACCTCAGCATATGTTGAG-CTTGGATAGC 353
Query 353 CGTAAGatcattcaccatcatcatcatcatcatcaCCATGATATCAAAGATGGTGGTG-- 410
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 354 CGTAAGATCATTCACCATCATCATCATCATCATCACCATGACATCAAAGATGGTGGTGCT 413
Query 411 -CTACTGCTGAGTGGATAAGTCACACGGATCATGATG---GTGATAatcatcat---cat 463
|||||| |||||||||| |||| ||||||||||||| | |||||||||||| |||
Sbjct 414 ACTACTGGTGAGTGGATAGGTCAGACGGATCATGATGATAGCGATAATCATCATCAACAT 473
Query 464 catcatcatcatcCATGGTGTAGTGATGAAGTTCTTGCTCTTCTTAGGTTCAGATCTACA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CATCATCATCATCCATGGTGTAGTGATGAAGTTCTTGCTCTTCTTAGGTTCAGATCTACA 533
Query 524 GTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCATACTTCAAGAAAGTTGGCAGAAGTT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCATACTTCAAGAAAGTTGGCAGAAGTT 593
Query 584 GGTTTCAAGAGGAGTCCACAAGAATGCAAAGAGAAATTTGAAGAAGAGGAGAGAAGATAT 643
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 GGTTTTAAGAGGAGTCCACAAGAATGCAAAGAGAAATTTGAAGAAGAAGAGAGAAGATAT 653
Query 644 TTCAATAG---------TAACAACAACAACACTAATGATCATCCACATATCGGCAATTAC 694
|||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 654 TTCAATAGCAACAACAACAACAACAACAACACTAATGATCATCAACACATCGGCAATTAT 713
Query 695 AACAACAAGGGAAATAATTATA-GAGTATTCAGTGAGGTTGAAGAG--------T--T-- 741
|||||||||||||||||||||| || |||| ||||||||||||||| | |
Sbjct 714 AACAACAAGGGAAATAATTATAGGA-TATTTAGTGAGGTTGAAGAGTTTTATCATCATGG 772
Query 742 T--T----ATG---ATGTTTCATCAGAAGTTGGGGATAACCAAAACAAGAGGAACAATTC 792
| | ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 TCATGACAATGAACATGTTTCATCAGAAGTTGGGGATAACCAAAACAAGAGGACCAATTT 832
Query 793 AGTAGAAGCAAAAGGAAACGTGGGAGAAACGGTAACGGGACAAGACTTAATGGAGGAGGA 852
|||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 833 AGTAGAAGGAAAAGGAAACGTGGGAGAAACGGT------ACAAGACTTAATGGCGGAGGA 886
Query 853 CAAATTAAGAGATCATGATCAGGGTCAAGTAGAGGAAGCATCAATGGAGAATAAAATAAA 912
||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 887 CAAATTAAGAGATCAGGATCAGGGTCAAGTAGAAGAAGCATCAATGGAGAATCAAAGAAA 946
Query 913 CTCCATTGAGGTTGGCAAAGTTGGAAACGTAGAGGAGGATGCGAAGTCATCATCATCGTC 972
||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 947 CTCTATTGAGGTTGGAAAAGTTGGAAACGTAGAAGATGATGCCAAGTCATCATCATCATC 1006
Query 973 AAGCTTGATGATGATCATAaaggagaagaagaagaggaagaagaagaaacagaaagagaG 1032
|||||||||||||||||| ||||||||||||| || ||||| ||||||| ||||||||||
Sbjct 1007 AAGCTTGATGATGATCATGAAGGAGAAGAAGAGGAAGAAGAGGAAGAAAGAGAAAGAGAG 1066
Query 1033 GTTTGGTGTGTTGAAAGGGTTTTGTGAGGGTCTTGTGAGGAACATGATAGCTCAACAAGA 1092
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1067 GTTTGGTGTGTTAAAAGGGTTTTGTGAGGGTCTAGTGAGGAACATGATAGCTCAACAAGA 1126
Query 1093 GGAAATGCATAAGAAGCTCCTagaagatatggtgaagaaggaagaagaaaagatagcgag 1152
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1127 GGAGATGCATAAGAAACTCCTGGAAGATATGGTGAAGAAGGAAGAAGAGAAGATAGCGAG 1186
Query 1153 agaggaagcttggaagaagcaagatattgagagagTTAACAAAGAGGTAGAGATTAGAGC 1212
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1187 AGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAGAGTTAACAAAGAGGTAGAGATTAGAGC 1246
Query 1213 ACAAGAACAAGCCATGGCTAGTGATAGAAACACCAACATCATCAAGTTCATATCCAAGTT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ACAAGAACAAGCCATGGCTAGTGATAGAAACACCAACATCATCAAGTTCATATCCAAGTT 1306
Query 1273 CACTGACCATGATCTTGATGTTGTCCAAAATCCAACAAGTC-TGTCTCAAGACTCATCTT 1331
|| |||||||||||||||||||||||||| |||||||| | | ||||||||||||||||
Sbjct 1307 TACAGACCATGATCTTGATGTTGTCCAAAACCCAACAAGCCCT-TCTCAAGACTCATCTT 1365
Query 1332 CTTTAGCTCTACCAAAAACCCAAGGCAGAAGAAAGTTTCAAACTAT-ATCATCACTATTA 1390
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1366 CTTTAGCTCTACGAAAAACCCAAGGCAGAAGAAAGTTTCAAACT-TCATCATCACTATTA 1424
Query 1391 CCTCAAACCCTAACTCCACATAACCCTTTAACCAATGACAAATCACTTGaacc-----c- 1444
||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 1425 CCTCAAACCCTAACTCCACATAACCTTTTAACCATTGACAAATCACTTGAACCTTTTTCT 1484
Query 1445 actaaaaccctaaaaaccaaaacccaaaccccaaaacctccaaaaaGCGATGATAAAAGT 1504
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1485 ACTAAAACCCTAAAACCCAAAAACCAAAACCCAAAACCTCCAAAAAGCGATGATAAAAGT 1544
Query 1505 GATCTTGGCAAGAGATGGCCAAAGGATGAAGTGTTGGCTCTTATCAACATTAGACGAAGT 1564
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1545 GATCTTGGCAAGAGATGGCCAAAGGATGAAGTGTTGGCTCTGATCAACATTAGAAGAAGT 1604
Query 1565 ATCAGTAACATGAATGATGATGATCATAAAGATGAGAACACATTATCAACTTCTTCAAAA 1624
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1605 ATCAGTAACATGAATGATGATGATCATAAAGATGAGAACTCATTATCAACATCTTCAAAA 1664
Query 1625 GCTGTTCCATTATGGGAAAGAATATCCAAGAAAATGTTGGAGATTGGGTACCAGAGAAGC 1684
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1665 GCTGTTCCATTATGGGAAAGAATATCCAAGAAAATGTTGGAGATTGGGTACAAGAGAAGT 1724
Query 1685 GCCAAAAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGAT 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GCCAAAAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGAT 1784
Query 1745 GTTAACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTCACAGCT 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 GTTAACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTCACAGCT 1844
Query 1805 TTATACAGCCAACCCTCCA-CAGGGaccacc---accaccgccaccaccgccacGTCAGC 1860
|||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1845 TTATACAGCCAACCA-CCAACAGGGACCACCGCCACCACCGCCACCACGGCCACGTCAGC 1903
Query 1861 CGGAGATCTA-ATAACCCGACCCGATGAGGAAAACCGGGTTGGATCCGAAGATAATGATA 1919
| |||||||| | | |||||||||| | | ||||||||||||||||| ||||| |||||
Sbjct 1904 CAGAGATCTAGACA-CCCGACCCGA-G-G-AAAACCGGGTTGGATCCCAAGATCCTGATA 1959
Query 1920 TTTCTGTAGCCATGCATGTAGATGGAGATGGTGCTGGCGATAAAAGCAATGTTCAGTTTT 1979
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 TTTCTGTACCCATGCATGTAGATGGAGATGGTGCTGGCGATAAAAGCAATGTTCAGTTTT 2019
Query 1980 CCGGTTTCGATCTTGAGTTCTAATAAATCC-TT-TATATATATATTATCAGTTTTATTCT 2037
| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 2020 CAGGTTTCGATCTTGAGTTCTAATAAATCCCTTCTATATATATATTATCAGTTATATTCT 2079
Query 2038 CTCttttttttttGTTTCTTCTTTTTGCTAAAACCTCATTTTTGGTTATTATGA-AATAG 2096
|| |||| | | ||| ||| |||||||||||||||||||||||||||| || ||
Sbjct 2080 CT-TTTTCT----G---CTT-TTT--GCTAAAACCTCATTTTTGGTTATTATGATAA-AG 2127
Query 2097 TTAT-ATATATGAATAGTGTTACTGTTTTAATGCTATTAGTGGGAAACGTATC 2148
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 TTATTATATATGAATAGTGTTACTGTTTTAATGCTATTAGTGGGAAACGTATC 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106525556490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5