BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489651
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2126 0.0
AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 451 7e-126
> AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49
species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0;
Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink). | chr5:10477771-10479384 FORWARD LENGTH=1614
Length=1614
Score = 2126 bits (1151), Expect = 0.0
Identities = 1339/1428 (94%), Gaps = 20/1428 (1%)
Strand=Plus/Plus
Query 1 AACAACAACCATCTTCGTCTCCACTCTCTCATCACCTCACCACCACCATGCTTTCTCTCA 60
|||||| |||||| ||||||||| ||||| ||| | |||||||||||||||||| |
Sbjct 1 AACAACCACCATCATCGTCTCCA--CTCTC-TCA--T---CACCACCATGCTTTCTCTAA 52
Query 61 CTGCAACAACTCTCAAATCCT-CACTCTTCACACAATCCAAAACCCATGGATTCTCCACT 119
||||||||||||||| |||| || | |||||||||||||||||||||||||||| || |
Sbjct 53 CTGCAACAACTCTCAGTTCCTCCA-TTTTCACACAATCCAAAACCCATGGATTCTTCAAT 111
Query 120 ACCCGACCCGTTTACCCAAAACCCTTCACCACCATAACCGCCGCCTTAATCCCCGCTTCA 179
|||||||||||||||| |||||||||||||||||| ||| |||| |||||||||||||||
Sbjct 112 ACCCGACCCGTTTACCGAAAACCCTTCACCACCATCACCTCCGCTTTAATCCCCGCTTCA 171
Query 180 AACCGTCAAGCTCCACCACAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AACCGTCAAGCTCCACCAAAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 231
Query 240 ATCCCTCCAAAATTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATCCCTCCAAAGTTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 291
Query 300 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGCTTCATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 292 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGATTCACT 351
Query 360 CCTCCATCAATCGAAGAACTCACCGGACTTTCTGGTGTCGAACAGAATC-GTCTCATCGT 418
||||||||||||||||||||||||||| | || |||||||||||||| | ||||||||||
Sbjct 352 CCTCCATCAATCGAAGAACTCACCGGAATCTCCGGTGTCGAACAGAA-CAGTCTCATCGT 410
Query 419 CGGCGCGCAAGTTCGTGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTGATCGCTGC 478
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 411 CGGCGCGCAAGTTCGAGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTTATAGCTGC 470
Query 479 GTTTGACACCGGTGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTGAATACAACTCAACG 538
||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 471 GTTTGACACAAATGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTAAACACAACTCAACG 530
Query 539 TATAGCTGCTGCTGAATACATTGTTGATCACGATTTCGATACGAAAGGAGCTCAAGATCT 598
| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 531 TGTAGCTGCTGCTGAATACATTGTTGATCACGGTTTCGATACGAAAGGAGCTGGAGATCT 590
Query 599 TGCGAGAGCGATTAAAGATTATCCGCATCGTCGCGGTGATGTTGGAT-GGGAAGATTTTG 657
|||||||||||||||||||| |||||||||||| || || ||||| | |||| || ||||
Sbjct 591 TGCGAGAGCGATTAAAGATTTTCCGCATCGTCGTGGCGACGTTGGTTTGGGA-GACTTTG 649
Query 658 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAATATC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 650 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAGCATC 709
Query 718 GGAGTCCGTCGGAGATTCGAACTACATTGCTCGAACAAGCTCTTGAAACTGCGGTAACAG 777
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 710 GGAGTCCGTCGGAGATTCGAACTACATTACTCGAACAAGCTCTTGAAACCGCGGTAACAG 769
Query 778 AGAAAGCGAAAAAGGCGGTGGTT-AGGGAGTTACATGGAGAGAGTGAAGAAGAGAGAGCT 836
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 770 AGAAGGCGAAAAAGGCGGTG-TTGAGGGAGTTACATGGAGAGAGTGAAGAAGAGAGAGTT 828
Query 837 AATGAAGAGGAGATAAAAATCATTCGTGTTCCTGTAGTGAGATTGAGGTTTGGAGAAGTA 896
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 829 AAAGAAGAGGAGATAAAAATCATTCGTGTTCCTGTAGTGAGATTAAGGTTTGGAGAAGTA 888
Query 897 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAGGAAGGAGAGGAGAAG 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 889 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAAGAAGGAGAAGAGAAG 948
Query 957 CTTCTTGAAGCTCCAATGGAGTTTGAAACTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1016
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 949 CTTCTTGAAGCACCAATGGAGTTTGAAAGTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1008
Query 1017 AAAGATTGGAGTAGATGGGTTGTTTTACCGGGTTGGGAACCCGTTGTGGCGGTTAGGAAA 1076
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 1009 AAAGATTGGAGTAGATGGGTGGTTTTACCGGGTTGGGATCCCGTGGTTGCGGTTAGGAAA 1068
Query 1077 GGAGGAGTGGCGGTTTCGTTTAGAGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGAA 1136
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1069 GGAG---TGGCGGTTTCGTTTAGCGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGGA 1125
Query 1137 GAGGCGATAATGGTTGTGATCGATAGGGAGAAGAAGACGGTGGAAGCGGATAATGGATAT 1196
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1126 GAGGCGATAATGGTTGTGATCGATAGGGAAAAGAAGACGGTGGAAGCTGATAATGGATAC 1185
Query 1197 TACTATCTTGTTGTGGCTGAAGGTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAG 1256
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1186 TACTACCTTGTTGTGGCTGATGGTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAG 1245
Query 1257 AAAGGAGTGAATGAGAGTTTAGGGATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1316
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1246 AAAGGAGTGAATGAGAGCTTAGGAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1305
Query 1317 GATGATGATTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAGGGATAGTT 1376
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1306 GATGATGAGTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAAGAATAGTT 1365
Query 1377 AAACAAATACTTTGTATGCTTTTGGTTCTGGAAAATATGTAATTTTTT 1424
|||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 1366 AAACAAATACTTA-TATGCTTTTGGTTTTGGCAAATATGTAATTTTTT 1412
> AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to
110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa
- 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr3:1225922-1227436 FORWARD
LENGTH=1515
Length=1515
Score = 451 bits (244), Expect = 7e-126
Identities = 917/1226 (75%), Gaps = 109/1226 (9%)
Strand=Plus/Plus
Query 201 CAACAACTCTATCAACCATTCCGTCCACCACCATC-ACCAATCCCTCCAAAATTCCGATC 259
||||| ||||| ||||| ||||| ||||| |||| ||| ||| || ||||||| ||
Sbjct 223 CAACAGCTCTACCAACCGTTCCGACCACCGTCATCTCCCATTCCAACC-CAATTCCGTTC 281
Query 260 ACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGTCTCGG-TCTCTGGTTCGAAT 318
||||||| ||||||| ||||||||| ||||||| | ||| | || ||||||||||||||
Sbjct 282 ACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAAT-GGCTCTCTGGTTCGAAT 340
Query 319 ACGCTCCACTCATTTCCTC-CTTATACACTGAAGGCTTCATTCCTCCATCAATCGAAGAA 377
|||| || || || || || ||| ||||| || || |||| ||||||| | |||||||||
Sbjct 341 ACGCACCTCTTATCTCTTCTCTT-TACACCGATGGTTTCACTCCTCCAACCATCGAAGAA 399
Query 378 CTCACCGGACTTTCTGGTGTCGAACAGAATCGTCTCATCGTCGGCGCGCAAGTTCGTGAC 437
||||||||| | || | |||||||||| ||| | |||||||| |||||||||||||||
Sbjct 400 CTCACCGGAATCTCAAGCATCGAACAGAACCGTTTAATCGTCGGTGCGCAAGTTCGTGAC 459
Query 438 TC-TTTAGTTCAATCCGGTGCCA--AACCGGAGCTGATCGCTGCGTTTGACACCGGTGGA 494
|| || |||||| | | ||| |||||||||| || ||||||| |||||||||||
Sbjct 460 TCAATT-CTTCAAT-CTAT-CCATGAACCGGAGCTCATTTCTGCGTTCGACACCGGTGGT 516
Query 495 GCCGAGCTTCTCTACGAGATTCGTCT-TTTGAATACAACTCAACGTATAGCTGCTGCTGA 553
|| |||||||| ||||| |||||||| || | || || || ||| | || || || |
Sbjct 517 GCAGAGCTTCTATACGAAATTCGTCTCCTT-AGCACCACGCAGCGTGTTGCAGCCGC-CA 574
Query 554 -ATACATTGTTGATCACGAT-TTCGATACGAAAGGAGCTCAAGATCTT-GCGA-GAGCGA 609
|| ||| |||||| || || ||| |||||||||| || ||| || || | |||| |
Sbjct 575 CATTCATCATTGATCGTAATATT-GATTCGAAAGGAGCACAGGAT-TTGGC-ACGAGCCA 631
Query 610 TTAAAGATTATCCGCATCGTCGCGGTGATGTTGGATGGGAAGATTTTGATTATAACTTAC 669
| || |||||||| | ||||| || || ||||||||| ||||||||||| |||||||
Sbjct 632 TCAAGGATTATCCTAACCGTCGTGGAGACGTTGGATGGTTGGATTTTGATTACAACTTAC 691
Query 670 CTGGAGATTGT-TTGTC-TTTTATGCT-TTATAGGAAAAGTAGAGA-ATATCGGAGTCCG 725
| ||||||||| || || || | || | ||| ||| | || ||||| | || || |||
Sbjct 692 CAGGAGATTGTCTT-TCATTCT-TG-TATTACAGGCAGAGCAGAGAGA-ATAAGAATCCA 747
Query 726 TCGGA-GATTCGAA-CTAC-ATTGC-TCGAACAAGCTCTT-GAAACTGCGGTAA-CAGAG 779
||||| | ||| || | | ||| || |||||| || | ||| | || ||||
Sbjct 748 TCGGATCA-GAGAACCT-CGA-TGCTTC-TACAAGC-ATTGGGGGTTGCAG-AATCAGA- 800
Query 780 AAA-GCGAA-AA-A-G--G----CGGTGGT-TA-GGGAGTTACATGG-AG-AGAG-TGAA 824
||| || || || | | | | | | | || ||| | ||| || || |||| | |
Sbjct 801 AAAGGCTAAGAACAGGTTGAACACAGAGCTATACGGG-G--ACAAGGAAGCAGAGAAGGA 857
Query 825 GAA-GAG-AG-AG-CTAATGAAGAGG-AGATAAAAATC-ATTCGTG-TTCCTGTAGTGA- 876
||| ||| || || || ||||||| || | ||| | ||||| | |||| || ||||
Sbjct 858 GAAGGAGAAGAAGAAGAAGGAAGAGGAAG-T-CAAAGCTATTCG-GATTCCAGTGGTGAG 914
Query 877 GATTGAGGTTTGGAGAAGTAGCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAG 936
| || | ||||||||||||||| | ||||| ||||| || |||||||||||||||||||
Sbjct 915 GCTT-AAGTTTGGAGAAGTAGCAGAAGCGACCTCGGTGGTAGTTTTACCGGTTTGTAAAG 973
Query 937 CAGAGGAAGGAGAGGAGAAGCTTCTTGAAGCTCCAATGGAGTTTGAAA-CTGGAGGAGAG 995
|||||||||| || ||||| |||||||||||||||||||| | | | | ||||| ||
Sbjct 974 CAGAGGAAGGGGAAAAGAAGATTCTTGAAGCTCCAATGGAGATC-ATAGCCGGAGGGGAT 1032
Query 996 TTT--GGTGTAGTGGAAGCTGAGAAAG-ATTGGA-GTAGATGGGTTGTT-TTACCGG-GT 1049
||| |||| || || || ||||||| || ||| | |||||||| || || ||| ||
Sbjct 1033 TTTAAGGTG--GTTGAGGCGGAGAAAGGAT-GGAAG-AGATGGGTAGTGCTT-CCGTCGT 1087
Query 1050 TGGGAACCC-GTTGTGGCGGTTAGGAAAGGAGGAGTGGCGGTTTCGTTT-AGAGATGATA 1107
|| ||||| || | || || ||||||| || ||||||||||| ||| || |||||||
Sbjct 1088 -GG-AACCCAGTGGCAGCCATTGGGAAAGGCGGTGTGGCGGTTTC-TTTCAGGGATGATA 1144
Query 1108 GGGAAGTTTTGCCGTGGAACGGGAAAGAAG-AGGCGATAATGGTTGTGATCGATAGGGAG 1166
| |||| |||| ||| | || |||| || || | || |||| ||| |||||||| |
Sbjct 1145 GAAAAGTGCTGCCTTGGGATGG-AAAGGAGGAGCCTTTACTGGTAGTGGCCGATAGGGTG 1203
Query 1167 AAGAA-GACGGTGGAAGCGGATAATGGATATTACTATCTTGTTGTGGCTGAAGGTGGGA- 1224
| ||| | | |||| || ||| | || ||||| | || || |||||||| | |||
Sbjct 1204 AGGAATGTTG-TGGAGGCTGATGACGGGTATTA-TCTCGTG--GTGGCTGA-GAACGGAC 1258
Query 1225 TGAAGTTGGATAGAGGATCGG-TGTTGAAGGAGAAAGGAG-TGAATGAGAGTTTAGGGAT 1282
| ||| | || | |||||| | | ||||||| || || || |||| ||||||||||||||
Sbjct 1259 TTAAGCTAGAGAAAGGATCAGAT-TTGAAGGCGAGAG-AGGTGAAGGAGAGTTTAGGGAT 1316
Query 1283 GGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGATTGGCAGATAAATGATGA 1342
|||||||||||| || |||||||| ||||| ||||||||||||||||||| || | || |
Sbjct 1317 GGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGATGATGATTGGCAGACAAGTCATCA 1376
Query 1343 AGAT-TGGGATTAGAATTCAATTAGA 1367
|| ||||| | ||||| ||| |||
Sbjct 1377 -GAACTGGGACT-GAATT-AAT-AGA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5