BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489666 Length=1541 Score E Sequences producing significant alignments: (Bits) Value AT5G28840.1 | Symbols: GME | GDP-D-mannose 3',5'-epimerase | ch... 1853 0.0 > AT5G28840.1 | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862173-10864903 REVERSE LENGTH=1612 Length=1612 Score = 1853 bits (1003), Expect = 0.0 Identities = 1139/1207 (94%), Gaps = 0/1207 (0%) Strand=Plus/Plus Query 85 CTCTGACCCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCGAAAACCTTTCTCAGA 144 ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 120 CTCTGACTCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCCAAAACCTTCCTCAGA 179 Query 145 ATGGGAACTACCAATGGAAGTGATTATGGTGCTTACACATACAAGGAGCTAGAAAGAGAG 204 ||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| Sbjct 180 ATGGGAACTACCAATGGAACAGACTATGGAGCATACACATACAAGGAGCTAGAAAGAGAG 239 Query 205 CCTTATTGGCCATCTGAGAAGCTCAAGATATCGATTACCGGCGCTGGAGGTTTCATTGCG 264 | ||||||||||||||||| ||||||||||| || || || ||||||||||||||||| Sbjct 240 CAATATTGGCCATCTGAGAATCTCAAGATATCAATAACAGGAGCTGGAGGTTTCATTGCA 299 Query 265 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAG 324 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAA 359 Query 325 AAGAATGAGCATATGACTGAAGACATGTTCTGTGATGAATTCCATCTTGTTGATCTTAGG 384 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 AAGAATGAACACATGACTGAAGACATGTTCTGTGATGAGTTCCATCTTGTTGATCTTAGG 419 Query 385 GTTATGGAGAATTGTCTCAAGGTTACTAAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 444 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 420 GTTATGGAGAATTGTCTCAAAGTTACTGAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 479 Query 445 GATATGGGTGGTATGGGTTTCATTCAGTCTAACCATTCGGTGATCATGTATAACAATACT 504 |||||||||||||||||||| || ||| ||| || || ||||| |||||||| |||||| Sbjct 480 GATATGGGTGGTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACT 539 Query 505 ATGATTAGTTTCAATATGATCGAGGCGGCTAGGATCAATGGGATTAAGAGGTTCTTCTAT 564 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 540 ATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGGTTCTTTTAT 599 Query 565 GCTTCTAGTGCTTGTATTTACCCGGAGTTCAAGCAGTTGGAGACTACTAATGTGAGCCTG 624 ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||| || Sbjct 600 GCTTCGAGTGCTTGTATCTATCCAGAGTTTAAGCAGTTGGAGACTACTAATGTGAGCTTG 659 Query 625 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAACTTGCA 684 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 660 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAGCTTGCT 719 Query 685 ACGGAGGAGTTGTGCAAGCATTACAACAAAGATTTTGGAATTGAGTGCCGCATTGGAAGG 744 |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 720 ACGGAGGAGTTGTGTAAGCATTACAACAAAGATTTTGGTATTGAGTGTCGAATTGGAAGG 779 Query 745 TTCCATAACATTTATGGTCCATTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 804 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTCCATAACATTTATGGTCCTTTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 839 Query 805 GCTTTCTGTAGAAAGGCTCTCACCTCCACAGATAGGTTTGAGATGTGGGGAGACGGGCTA 864 ||||||||||| ||||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct 840 GCTTTCTGTAGGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTT 899 Query 865 CAAACCCGTTCTTTTACCTTCATCGATGAGTGCGTTGAAGGTGTACTCAGGTTGACAAAA 924 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 900 CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGGTTGACAAAA 959 Query 925 TCTGATTTCCGTGAGCCGGTGAACATTGGAAGCGATGAGATGGTGAGCATGAATGAGATG 984 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 960 TCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATGGTGAGCATGAATGAGATG 1019 Query 985 GCTGAGATGGTTCTCAGCTTTGAGGAGAAGAAGCTTCCAATTCACCACATTCCAGGCCCA 1044 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1020 GCTGAGATGGTTCTCAGCTTTGAGGAAAAGAAGCTTCCAATTCACCACATTCCTGGCCCG 1079 Query 1045 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1139 Query 1105 CCAAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1164 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CCTAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1199 Query 1165 GAGAAAGAGAAAGCAAAAGGAAGCGATGTGTCCCTTTACGGGTCATCAAAGGTGGTTGGA 1224 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1200 GAGAAAGAGAAAGCAAAGGGAAGCGATGTGTCGCTTTACGGGTCATCAAAGGTGGTTGGA 1259 Query 1225 ACTCAAGCGCCGGTTCAGCTAGGCTCACTCCGCGCAGCTGATGGAAAAGAGTGAATTTCA 1284 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1260 ACTCAAGCACCGGTTCAGCTAGGCTCACTCCGCGCGGCTGATGGAAAAGAGTGAAGTTCA 1319 Query 1285 CCAAAGT 1291 ||||||| Sbjct 1320 CCAAAGT 1326 Score = 311 bits (168), Expect = 1e-83 Identities = 234/263 (89%), Gaps = 15/263 (6%) Strand=Plus/Plus Query 1288 AAGTTCAGCAAAATGTTTAGATATATGTTTAGGTAGCTTCCTATT-AAAAAGCTATAATA 1346 |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| Sbjct 1354 AAGTTCAGCAAAATGTTTAGATATATTTTTAGGTAGCTTCCTATTAAAAAAGCAATAATA 1413 Query 1347 AGTGTTTTGGATTTTGGTTCCTTCTCTTCTGCTAATTCTTGTTTATGTTTACTTGGAAAA 1406 ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||| Sbjct 1414 AGTGTTTTGGATTTTGGTTCCTTCTATTCTGCTAATCCTTGTTTATGTTTAGTTGAAAAA 1473 Query 1407 GTTTGC----ATTGTTAAGTCAATTATACGATGTGTTATTGTGGTCCTTTCA--CA--GT 1458 |||||| ||||||||||| |||| | || | | ||||||||||||||| || || Sbjct 1474 GTTTGCTTGCATTGTTAAGTCTGTTAT-C-ATAT-T-ATTGTGGTCCTTTCATTCACAGT 1529 Query 1459 ATGTATGTTTATTGTCATCGTCAACTTGATGTTGTGGTCCTCTCACGGACCAGTAACTAA 1518 |||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| | || Sbjct 1530 ATGTATGTTTATCATCATAGTCAAGTTGATGTCGTGGTCCTCTCACGGACCAGTA-C-AA 1587 Query 1519 GTAAGTGGCTTGTGTTTTTTCTT 1541 ||||||||||||||||||||||| Sbjct 1588 GTAAGTGGCTTGTGTTTTTTCTT 1610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76053825675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5