BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489709 Length=1160 Score E Sequences producing significant alignments: (Bits) Value AT4G09010.1 | Symbols: APX4, TL29 | ascorbate peroxidase 4 | ch... 1411 0.0 > AT4G09010.1 | Symbols: APX4, TL29 | ascorbate peroxidase 4 | chr4:5777397-5779462 REVERSE LENGTH=1279 Length=1279 Score = 1411 bits (764), Expect = 0.0 Identities = 873/926 (94%), Gaps = 6/926 (1%) Strand=Plus/Plus Query 237 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTGCCA-TGGGAATGGAATTAATA 295 ||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| Sbjct 273 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTG-CAGTCGGAATGGAATTAATA 331 Query 296 GGCAATGGTTTCATTAATC-ATGTGGGTGATGCAAATGCTGCTGATTTGAATCAACGTAG 354 ||||| ||||||||||| | |||||||||||||||| |||||||| |||||||||||||| Sbjct 332 GGCAACGGTTTCATTAA-CAATGTGGGTGATGCAAAAGCTGCTGACTTGAATCAACGTAG 390 Query 355 ACAACGATCCGAGCTTCAATCAAAGATCAAGATTACGCTTTCGAGCGCCATTAAGGCTAA 414 ||||||||||||| |||||||||||||||||||| |||||| | | ||||||||||||| Sbjct 391 ACAACGATCCGAGTTTCAATCAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAA 450 Query 415 ACCGGAGCTTGTACCTTCCATACTCAAACTAGCTCTCAATGATGCAATGACTTATGATAA 474 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 451 ACCGGAGCTTGTACCTTCCTTACTCAAACTAGCTCTCAATGATGCTATGACTTATGATAA 510 Query 475 GGCTACAAAATCCGGGGGAGCCAATGGATCTATTCGGTTCAGCTCTGAGCTAAGTAGAGC 534 |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 511 GGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGCTCTGAGCTAAGTAGAGC 570 Query 535 AGAGAACGAGGGACTTTCTGATGGGTTGAGTCTGATAGAGGATGTGAAGAAGGAGATTGA 594 |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 571 AGAGAATGAGGGACTTTCTGATGGGTTGAGTTTGATAGAGGAAGTGAAGAAGGAGATTGA 630 Query 595 CTCGATCTCGAAGGGAGGGCCTATTTCATATGCAGATCTCATTCAATTGGCAGGACAATC 654 ||| |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| Sbjct 631 CTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGACAATC 690 Query 655 AGCGGTCAAGTCTACGTTTTTAGCATCGGCAATCCGCAAATGTGGTGGAAATGAAGAAAA 714 ||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||||| || Sbjct 691 AGCGGTCAAGTTTACATATTTAGCATCGGCTATCCGAAAATGTGGTGGAAATGAAGAGAA 750 Query 715 AGGGAACTTACTCTACACAGCATATGGTTCTGCTGGTCAGTGGGGCTTGTTTGATAGAAA 774 ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 751 GGGGAACTTACTTTACACAGCATATGGTTCAGCTGGTCAGTGGGGATTGTTTGATAGAAA 810 Query 775 TTTCGGAAGGAGTGATGCAACTGAGGCAGATCCAGAAGGCAGAGTCCCACAGTGGGGTAA 834 ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || Sbjct 811 TTTTGGAAGGAGTGATGCAACAGAGGCTGATCCAGAAGGCAGAGTCCCACAATGGGGGAA 870 Query 835 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCCATTGGATTGGGTCCTCGTCAGCT 894 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 871 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTCAGCT 930 Query 895 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAA-CTAGCAACAGAACAGCTCTTGGCTA 953 |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| Sbjct 931 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAAGCT-GCAACAGAACAGCTCTTAGCTA 989 Query 954 CTGACCCGCAAGTTGCTCCATGGGTTCAGAAGTACCAAAGAAGCCGTGAAACCGTATCTC 1013 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 990 CTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTC 1049 Query 1014 AGACAGATTACGAGGTTGATCTAATAACAGCATTCACAAAGCTAAGTTGCTTAGGACAAC 1073 |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 1050 AGACTGATTACGAGGTTGATCTCATAACTGCATTCACAAAGCTAAGTTGCTTAGGACAGC 1109 Query 1074 AAATCAACTTCGAGGCATACACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1133 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1110 AAATCAACTTCGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1169 Query 1134 TATAAGCTATGTACACTATATGTATA 1159 |||||||||||||||||||||||||| Sbjct 1170 TATAAGCTATGTACACTATATGTATA 1195 Score = 385 bits (208), Expect = 6e-106 Identities = 232/243 (95%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACACTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACACTC 60 Query 61 TCCATTTTCTTCAGACAActctctcttctttcttctctcttctctgtctcATCACAAACC 120 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 61 TCCATTTTCTTCAGACAACTCTTTCTCCTTTCTTCTCTCTTCTCTGTCTCATCACAAACC 120 Query 121 AGAGATGGGAGGAGTCTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGAAATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180 Query 181 TCAACATCTCACTACACTCTCTTCTTCTTCTTCTCATCGCTCTGCTGTCATAAGATCTTT 240 ||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||| || Sbjct 181 TCAACATCTCACTACACTCTCTTCTTCTTCT-C--ATCGCTCTGCTGTTATACGATGTT- 236 Query 241 CCA 243 ||| Sbjct 237 CCA 239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56927418030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5