BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489743 Length=1665 Score E Sequences producing significant alignments: (Bits) Value AT4G08310.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2296 0.0 > AT4G08310.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | chr4:5248864-5252150 REVERSE LENGTH=1709 Length=1709 Score = 2296 bits (1243), Expect = 0.0 Identities = 1552/1692 (92%), Gaps = 58/1692 (3%) Strand=Plus/Plus Query 1 TTCTGAGAGAAATGTCT---GGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 57 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCTGAGAGAAATGTCTGACGGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 60 Query 58 ACAAGATTGATTCCAAGGACGGTG-AG--GCAACA--A-C---AACAGCTATCGAGTCTC 108 |||||||||||| |||||||||| || ||||| | | ||||| ||||||||| | Sbjct 61 ACAAGATTGATTTGAAGGACGGTGAAGCAACAACACCACCAAAAACAGATATCGAGTCAC 120 Query 109 AGATTCTCGCGGCTATGCAGTCTCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 168 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATTCTCGCGGCTATGCAGTCCCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 180 Query 169 CCTTTGAGGGTGTTCGGAGGTTGCTAGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 228 ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 181 CCTTTGAAGGTGTGCGGAGGTTGCTGGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 240 Query 229 ATGCGCACAAGAGCTTTGTTAAACAACATTTGCATAAGTGCTTAGAAGGTGCTGAGAATG 288 ||| ||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||| Sbjct 241 ATGTGCATAAGAGCTTTGTTAAGCAACATTTGGTTCAGTGCTTAGCAGGTGCTGAGAATG 300 Query 289 ATGAAACTTCGGAAAATTCTCAAGAAACTGAGAAGAAAGATGCTGTTACTCCTGTGAAAG 348 |||||||||| |||||||||| |||||||||||||||||||| ||| ||||| ||||||| Sbjct 301 ATGAAACTTCAGAAAATTCTCTAGAAACTGAGAAGAAAGATGATGTAACTCCAGTGAAAG 360 Query 349 AAGTAGCAAAGTTATCTAAAGAGCACAAGGA-GAAAAAAGATGTTAAGGAAGATACGACT 407 ||| |||| ||||||||||||||||| | || ||||||||||| ||||||||||| |||| Sbjct 361 AAGCAGCAGAGTTATCTAAAGAGCAC-ACGACGAAAAAAGATGGTAAGGAAGATATGACT 419 Query 408 GGTGATGATGAGAAAACGGAGGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACA 467 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTGATGATGAGAAAACAAAAGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACG 479 Query 468 TCCCAATCTGTAGCTGAGCAAACAAAGGATGAGGACAGCAAAGAGGTCCTGCAGAGTGAT 527 ||| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 480 TCCAAATCTGTTGCTGAGCAAACAAAGGATGAGG--A-CAAAGAGGTCCTGCAGAGTGAT 536 Query 528 ATaaaaaaaGCCCTTCGTAAAAGGGCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 587 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 537 ATAAAGAAAGCCCTTCGTAAAAGGTCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 596 Query 588 ATGGGCTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTACTCTCTTGAC 647 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 597 ATGGGTTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTATTCTCTTGAC 656 Query 648 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCCTGAAGCTACA 707 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 657 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCATGAAGCTACA 716 Query 708 AAATCGTCAACTAAGGCTCAGAGGAAAACTGTAACCAAGAAGGTCAAGAGCACACCAGCT 767 |||| ||||||||||||||||||||| | ||| | |||||||||||||||||||||||| Sbjct 717 CAATCTTCAACTAAGGCTCAGAGGAAACCAGTATCTAAGAAGGTCAAGAGCACACCAGCT 776 Query 768 AAAAATTCAGACAGTGAAGAAATGTCTGATTCAGATGGT---------GAGGACGACAAG 818 ||||| ||||||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 777 AAAAACTCAGACAGTGAAGAAATGTTTGATTCAGATGGTGAAGACGAGGAGGAGGACAAG 836 Query 819 GAAGTCA-CTGTAAAAAAGAAGAAGACGGCTGAGAAAAGAAAATCGTCAAAGTCAGAGGG 877 ||||| | |||| |||| ||||||| ||| ||||||||||||| |||||||||||||| Sbjct 837 GAAGT-AGCTGT--AAAA-AAGAAGATGGCGGAGAAAAGAAAATTATCAAAGTCAGAGGG 892 Query 878 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACTTGCATTTGCAAAGAAGACAAAACAAAC 937 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct 893 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACCTGCCTCTGCAAAGAAGACAAAACAAAC 952 Query 938 AGATTCACAGAGCGACAGTGATGCAGGAGAAAAGGCATCATCTTCCGAAAAATCTGTGAA 997 ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| || Sbjct 953 AGATTCACAGAGCGACAGTGACGCAGGAGAAAAGGCACCATCTTCAGAAAAATCTGTAAA 1012 Query 998 GAAACAGGAAACTCCAACGACTGGCTACGGGAAGCGTGTTGAGCATCTTAAATCGATCAT 1057 ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1013 GAAACCGGAAACTCCAACGACTGGCTATGGGAAGCGTGTTGAGCACCTTAAATCGATCAT 1072 Query 1058 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1132 Query 1118 GGAGAAACGCGAGGAAACTCTGATAAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1177 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1133 GGAGAAACGCGAGGAAATTCTGATTAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1192 Query 1178 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCaaaaaaaGAAAAGAAAGAACAAA 1237 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1193 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCAAGAAAAGAAAAGAAAGAACAAA 1252 Query 1238 GGAGCTCGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCGAGGAGAAGATCCA-CTG 1296 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | | Sbjct 1253 GGAGCTTGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCAAGGAGAAGATCCAGC-G 1311 Query 1297 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGAATCag 1356 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1312 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGATTCAG 1371 Query 1357 aagattctgagaatgaggaagatgaggatgaagaagtagtagtagaagaagatgaagacg 1416 |||||||||||||||| || |||||||||||||||||||||||||||||||| || || | Sbjct 1372 AAGATTCTGAGAATGAAGAGGATGAGGATGAAGAAGTAGTAGTAGAAGAAGAAGAGGA-G 1430 Query 1417 aagaagaagaCGAGGTAGGT-GATGAAGATGGCGGAGATGGAAGTCAAAACGAAGGAGAA 1475 ||||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 1431 --GAAGAAGACGAGGGAGGTAG-TGAAGATGGCGGAGAGGGAAGTCAAAACGAAGGAGAA 1487 Query 1476 CCAAACACTGAGGATGGTGGTGAAGA-GAAAAGCGAGTAATTGTAAGATCGTTGGTTGTG 1534 | ||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||| Sbjct 1488 CTAAAAACTGAGGATGGTGGTGAAGAAGAAA-GCGAATAATTGTAAGATCGTTGGTTGT- 1545 Query 1535 CTTAGCTTTGTCGCAGGAACAATGTAGCTTAGCTTCTCTATGTACTGTTGTAGAGTGGTG 1594 || | | | | |||||| ||| ||| ||||||||||||||||||||||| Sbjct 1546 -TT-G-T-------A--A----TGTAGCCTAGTTTCACTATGTACTGTTGTAGAGTGGTG 1589 Query 1595 ATATTTTGTAC-TTTTTAAGGTGTTAATCATAATTATGACATTAGGATATGAATTTTAAG 1653 ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 1590 ATATTTTGTACCTTTTTAATGTGCTAATCATATTTATGACATTAGGATATGAATTTTAAG 1649 Query 1654 ACTTGCATTATA 1665 ||||||||||| Sbjct 1650 GCTTGCATTATA 1661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82278693255 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5