BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489749
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase | ch... 1862 0.0
> AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase |
chr4:5314905-5317456 FORWARD LENGTH=1516
Length=1516
Score = 1862 bits (1008), Expect = 0.0
Identities = 1257/1373 (92%), Gaps = 34/1373 (2%)
Strand=Plus/Plus
Query 1 AATTACTATTATA-CCC-CA-AAAAATGACAGAGCGTGTGTCTCTCACACTCAACGGAAC 57
||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 70 AATTACTATTATACCCCTCAGAAAAATGGCAGAGCGTGTGTCTCTCACACTCAACGGAAC 129
Query 58 CCTCC-TT-T-CTCCTCCCAAAACCACCACAACAACAATGTCTTCTtctctccgttccac 114
||||| || | ||||||||| ||| || |||||||||||||||||||||||||| || ||
Sbjct 130 CCTCCTTTCTCCTCCTCCCACAACAACAACAACAACAATGTCTTCTTCTCTCCGATCTAC 189
Query 115 caccgtcgcttctcgtctcctccg---ctcctcctcctccaccagatccactctcactct 171
||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 190 CACCGCCGCTTCTCTTCTCCTCCGCTCCTCCTCCTCCTCCTCCAGATCCACTCTCACTCT 249
Query 172 ctccgcttccacttctctctccttcgccagatctctcgtctcttctccac-t-tctc-tc 228
|||||||||| | ||||||||||||| ||||||||||||||||||||||| | |||| ||
Sbjct 250 CTCCGCTTCCTCCTCTCTCTCCTTCGTCAGATCTCTCGTCTCTTCTCCACGTCTCTCTTC 309
Query 229 ttcttcA-CCCTTGGATTTCCAGAAGAGACATCGAGTTTCGTCGGTGAATCGGAGCTTCA 287
||||||| ||| | | | ||||||| | ||||| || |||||||||||||||| ||||
Sbjct 310 TTCTTCATCCC-T--CTCT-CAGAAGAAATATCGAATTGCGTCGGTGAATCGGAGTTTCA 365
Query 288 ACTCCACCGCCGCAACTACTAAATGTTCAGCTTCAGATCCTGATCAGTTAAAAAACGCTC 347
|||||||| |||| ||||||||| |||| ||||||||||||||||||| || ||||||
Sbjct 366 ACTCCACCACCGCCGCTACTAAATCTTCATCTTCAGATCCTGATCAGTTGAAGAACGCTA 425
Query 348 GAGAAGATATCAAAGAGCTTCTCAACACCAAATTCTGCCATCCAATTTTGGTTCGATTAG 407
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 426 GAGAAGATATCAAAGAGCTTCTCAGCACCAAATTCTGCCATCCGATTTTGGTTAGATTAG 485
Query 408 GGTGGCATGATGCTGGTACATACAATAAGAACATTAAGGAATGGCCACAGAGAGGTGGAG 467
| ||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct 486 GTTGGCATGATGCTGGTACGTATAACAAGAACATTAAGGAATGGCCACAAAGAGGTGGAG 545
Query 468 CTAATGGAAGTTTGAGATTTGAGATTGAGCTTAAGCATGCTGCTAATGCTGGTCTTGTGA 527
||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 546 CTAATGGAAGTTTGAGATTCGATATTGAGCTTAAACATGCTGCTAACGCTGGTCTTGTGA 605
Query 528 ATGCTTTAAACTTGATTAAGGATATCAAAGAGAAGTACTCTGGGATCACTTATGCTGATT 587
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 606 ATGCTTTAAACTTGATTAAGGATATCAAAGAGAAATACTCTGGGATCAGTTATGCTGATT 665
Query 588 TATTCCAATTGGCTAGTGCTACTGCTATAGAGGAAGCTGGAGGACCTAAAATACCGATGA 647
| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 666 TGTTCCAGTTAGCTAGTGCTACTGCTATAGAGGAAGCTGGAGGACCGAAAATACCGATGA 725
Query 648 AATATGGAAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCTGAAGAAGGAAGGCTTCCTG 707
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 726 AATATGGTAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCAGAAGAAGGAAGGCTTCCAG 785
Query 708 ATGCTGGTCCTCCTTCACCTGCTAATCATCTCAGAGAAGTTTTTTACAGAATGGGACTAG 767
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 786 ATGCTGGTCCTCCTTCACCTGCTACTCATCTCAGAGAAGTTTTTTACAGAATGGGATTAG 845
Query 768 ACGACAAGGACATAGTTGCGTTGTCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAAC 827
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 846 ATGACAAGGACATAGTTGCATTATCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAAC 905
Query 828 GTAGTGGTTGGGGGAAGCCAGAGACAAAATACACGAAAGAGGGACCAGGCGCACCAGGAG 887
||||||||||||||||||| ||||| || ||||||||||| ||||| || ||||||||||
Sbjct 906 GTAGTGGTTGGGGGAAGCCTGAGACGAAGTACACGAAAGAAGGACCTGGAGCACCAGGAG 965
Query 888 GACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAATTCTTACTTCAAGGAAATCAAGG 947
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 966 GACAGTCATGGACACCAGAGTGGCTGAAGTTTGATAATTCTTACTTCAAGGAGATCAAGG 1025
Query 948 AAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATCTTTGAAGATTCTT 1007
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1026 AAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATCTTCGAAGATTCTT 1085
Query 1008 CTTTCAAGATCTATGCTGAGAAGTATGCTGCAGATCAGGATGCCTTCTTCAAGGATTACG 1067
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1086 CTTTCAAGGTCTATGCTGAAAAGTATGCTGCAGATCAGGATGCATTTTTCAAGGATTACG 1145
Query 1068 CTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAAAATTTGACCCTCCTGAGGGTATCG 1127
||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 1146 CTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAGAATTTAACCCTCCGGAGGGTATCG 1205
Query 1128 TTATCTAACGGGG-CACCTAATTTACTCTACCTCTATTTAAACAGGACTTATGATAT-AG 1185
|||||||| |||| ||| |||||||||| ||| | | ||||||||| | ||
Sbjct 1206 TTATCTAATGGGGGCACATAATTTACTCAACC---A--------G-ACTTATGATTTTAG 1253
Query 1186 AGAAACGTAGTTCAATAATGATAGAGAAGAAAAAGTTGTTGGAGAACTTTTCCTGCAAGT 1245
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||
Sbjct 1254 AGAAACGTAGTTCAATAATGAAAGAGAAGAAAAAGTTGACGGAGAACTTTTCATGCGAGT 1313
Query 1246 ACTTTTCGAGATATCTTTTGGACAATGTTTCTGGCTGTTCAAAGGATTTTGTTTAGCCGA 1305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ACTTTTCGAGATACCTTTTGGACAATGTTTCTGGCTGTTCAAAGGATTTTGTTTAGCCGA 1373
Query 1306 AAGTATTTGATCGTTTTCATGGTTTTGGGCTTTTACAAATTTTGTCTTG-AAT 1357
||||||||||||||||||||||||||||||||| || |||| ||||| |||
Sbjct 1374 AAGTATTTGATCGTTTTCATGGTTTTGGGCTTT--CATGTTTTTTCTTGTAAT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5