BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489781
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08870.1 | Symbols: | Arginase/deacetylase superfamily prot... 1820 0.0
AT4G08900.1 | Symbols: | arginase | chr4:5703347-5705346 FORWA... 1147 0.0
> AT4G08870.1 | Symbols: | Arginase/deacetylase superfamily protein
| chr4:5646439-5648727 REVERSE LENGTH=1284
Length=1284
Score = 1820 bits (985), Expect = 0.0
Identities = 1113/1173 (95%), Gaps = 16/1173 (1%)
Strand=Plus/Plus
Query 1 ACTTATACCTCACTGAGTTAC-A-ATTTCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 58
|||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||
Sbjct 2 ACTTATACCTCACTGACTTACTACAAATCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 61
Query 59 CCCTATTTCAAGAGACTCATTTCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 118
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 62 CCCTATTTCCAGAGACTCATTGCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 121
Query 119 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 181
Query 179 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 241
Query 239 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 301
Query 299 CATGTAAGGGAAGCTATTTGGTGTGGTAGCACAAATTCCACCACTGAAGAAGGGAAGGAG 358
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 302 CATGTAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAG 361
Query 359 CTAAAAGATCCACGGGTTTTAAGTGATGTTGGTGATATTCCGGTACAAGAAATTAGAGAA 418
|||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 362 CTAAAAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAA 421
Query 419 ATGGGGGTTGATGATGATAGACTCATGAATGTAGTAAGTGATTCTGTGAAGCTGGTGATG 478
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 422 ATGGGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATG 481
Query 479 GAAGAGGAACCATTGCGCCCGCTGGTCATTGGTGGAGACCATTCCATATCTTATCCTGTT 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 482 GAAGAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTT 541
Query 539 GTGAGAGCGGTTTCGGAGAAACTGGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 598
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 542 GTGAGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 601
Query 599 CCAGATATATATGACCGTTTCGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 658
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 602 CCCGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 661
Query 659 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCGATAAACAAG 718
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 662 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAA 721
Query 719 GAAGGACGGGAACAAGGCACGAAGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 778
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 722 GAAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 781
Query 779 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841
Query 839 TCGATCGATGTTGACTGTCTCGATCCAGGATTTGCACACGGAGTGTCCCACTTCGAACCA 898
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901
Query 899 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATCTTACATAACCTTCAAGGAGATTTAGTG 958
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGATTTGGTG 961
Query 959 GGGGCTGATGTTGTTGAGTACAACCCGCAGCGTGATACCGCTGATGACATGACGGCAATG 1018
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 962 GGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAATG 1021
Query 1019 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATAAATTTGAATCGTA 1078
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1022 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAATTTAAATGGTA 1081
Query 1079 TTTTACTATTTTGGAGTTTCATCGT-GTAAGCCTGTATTATTG-AATAAGTGTGGCCCCT 1136
|| || ||||||| ||||| | |||| |||| ||| | ||||||||||| | |
Sbjct 1082 -----CT-TT--GGAGTTTAATCGTTG-AAGCTTGTAATAT-GCAATAAGTGTGGTCTCA 1131
Query 1137 TGGACG-GAGCATCGAATATGCTTAATATCAAT 1168
| ||| | | |||||||| |||||||||||||
Sbjct 1132 TAGACATG-GTATCGAATAAGCTTAATATCAAT 1163
> AT4G08900.1 | Symbols: | arginase | chr4:5703347-5705346 FORWARD
LENGTH=1347
Length=1347
Score = 1147 bits (621), Expect = 0.0
Identities = 847/955 (89%), Gaps = 19/955 (2%)
Strand=Plus/Plus
Query 123 TCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAA 182
|||||| |||||| || || || |||||||||||||||||||| || |||||||||||||
Sbjct 238 TCGAGAAAGGGCAAAATCGCGTGATTGATGCTTCGTTAACTCTTATTCGTGAAAGGGCAA 297
Query 183 AACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTG 242
|||||||||||||||||||||| || |||| ||||| |||||| ||||| |||||||||
Sbjct 298 AACTCAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTG 357
Query 243 GAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATG 302
| |||||||||||||||||||||||||||||| |||| || || || |||||||||| |
Sbjct 358 GTGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTA 417
Query 303 TAAGGGAAGCTATTTGGTGTGGTAGCACAAATTCCACCACTGAAGAAGGGAAGGAGCTAA 362
| | |||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 418 TTCGAGAAGCTATTTGGTGTGGTAGCACAAACTCTGCCACTGAAGAAGGGAAGGAGTTGA 477
Query 363 AAGATCCACGGGTTTTAAGTGATGTTGGTGATATTCCGGTACAAGAAATTAGAGAAATG- 421
| |||||||||||| ||| ||||||||| ||| ||||||||||||| ||||||| | ||
Sbjct 478 AGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCGGTACAAGAGATTAGAG-ATTGT 536
Query 422 GGGGTTGATGATGATAGACTCATGAATGT-AGTAAGTGATTCTGTGAAGCTGGTGATGGA 480
|||||||||||||||||||| |||||||| | ||||||| ||||||||| ||||||||||
Sbjct 537 GGGGTTGATGATGATAGACTGATGAATGTCA-TAAGTGAATCTGTGAAGTTGGTGATGGA 595
Query 481 AGAGGAACCATTGCGCCCGCTGGTCATT-GGTGGAGACCATTCCATATCTTATCCTGTTG 539
||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 596 AGAGGAACCATTGCGTCCGTTGGTC-TTAGGTGGAGACCATTCCATATCTTATCCTGTTG 654
Query 540 TGAGAGCGGTTTCGGAGAAACTGGGAGGACCCGTGGATATTCTTCATCTTGATGCACATC 599
||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||||||||
Sbjct 655 TGAGAGCGGTTTCTGAGAAGCTTGGAGGGCCTGTGGACATTCTTCATCTTGATGCACATC 714
Query 600 CAGATATATATGACCGTTTCGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTA 659
| |||||||||||| |||| ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 715 CGGATATATATGACTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTA 774
Query 660 TCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCGATAAACAAGG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 775 TCATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGG 834
Query 720 AAGGACGGGAACAAGGCACGAAGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAA 779
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 835 AAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCGA 894
Query 780 AAGATCGCCAAATGTTGGAAAA-CTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 838
||||||||| |||||||||||| || |||| ||||||||||||||||||| || || |||
Sbjct 895 AAGATCGCCCAATGTTGGAAAATCT-GAAATTAGGGGAAGGAGTGAAGGGGGTATACATC 953
Query 839 TCGATCGATGTTGACTGTCTCGATCCAGG-ATTTGCACAC-GGAGTGTCCCACT-TCGAA 895
||||| || ||||||||||||||||| || |||||||| | |||||||| || | |||||
Sbjct 954 TCGATAGACGTTGACTGTCTCGATCC-GGCATTTGCAC-CTGGAGTGTCGCA-TATCGAA 1010
Query 896 CCAGGAGGTCTTTCTTTCCGAGACGTCCTTAACATCTTACATAACCTTCAAGG-AGAT-T 953
||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||| |
Sbjct 1011 CCAGGAGGTCTCTCTTTCCGTGACGTCCTTAACATCTTACACAACCTTCA-GGCAGATGT 1069
Query 954 TAGTGGGGGCTGATGTTGTTGAGTACAACCCGCAGCGTGATACCGCTGATGACATGACGG 1013
| || |||||||| ||||| |||| |||||||||||||||||| | ||| | |||||| |
Sbjct 1070 T-GTCGGGGCTGACGTTGTCGAGTTCAACCCGCAGCGTGATACTGTTGACGGCATGACAG 1128
Query 1014 CAATGGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAAT-AAA 1067
||||||| || |||||| |||||||||| |||| || ||||| || |||| |||
Sbjct 1129 CAATGGTTGCAGCTAAGCTTGTTAGAGAATTAGCTGCGAAAATCTCGAAATGAAA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5