BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489815
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09620.1 | Symbols: | Mitochondrial transcription terminati... 1136 0.0
> AT4G09620.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:6076992-6079102 REVERSE LENGTH=972
Length=972
Score = 1136 bits (615), Expect = 0.0
Identities = 774/845 (92%), Gaps = 34/845 (4%)
Strand=Plus/Plus
Query 1 TTGCCTCTCTATCTCTCAACGAAACAATGGTTGGTTCCTAAATCTCTCACCTAC-ACAAA 59
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 9 TTGCCTCTCTATCTCTCAACGAGACAATGGTTGGTTCCTAAATCTCTCACCT-CAACAAA 67
Query 60 TCTTCTGATCACGGTTTCTCAG---------ACTTTGTTGACTCGGTTGCTTATCTGACT 110
||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 68 TCTTCTGATCAGGGTTTCTCAGAATCTTTCTACTTTGTTGACTCGGTTGCTTATCTGACT 127
Query 111 CA--G---T--G---ATCGGCGACCGAGTTAAGAGTATCCTCGCACACTCTAGGTAT-AT 159
|| | | | ||||| || |||||||||||||||||||||||||||||| || |
Sbjct 128 CAGTGATTTGAGTTCATCGGTGAACGAGTTAAGAGTATCCTCGCACACTCTAGGCATCTT 187
Query 160 TTCTCCACTTGCATCAATGGAGATGGTGGGAAACTCGTTAGCTTCACCTTTGGCAACATT 219
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 188 TTCTCCACTTGCGTCAATGGAGATGGTGGGAAACTCGTTGGCTTCACCTTTGGCAACATT 247
Query 220 GGGTTCTGCCAAATACTTTCGCCACCCTACAGGTGATCTTGTAACATACACTAATGTTTT 279
|||||| ||||||| ||| |||||| || ||| |||||||||||||||||||||||||||
Sbjct 248 GGGTTCAGCCAAATGCTTCCGCCACTCTGCAGTTGATCTTGTAACATACACTAATGTTTT 307
Query 280 ACCATTGAGCCTGAACTCGAACTCATCGTATCATGGTGTGATTGGAGGAGTAAGGACATC 339
|||||| | | | | |||||| |||||||||||||| | |||||| |||||||||||
Sbjct 308 ACCATT-A---AG-A-TTGAACTCGTCGTATCATGGTGTTAATGGAGGCGTAAGGACATC 361
Query 340 TTTTGT-TTCGCGAAAG-AAATGGATAGTGTTTTGTTCAACAACACAAGTGGAAACCTCT 397
|| | |||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 362 -TTCATATTCGCG-AAGCAAGTGGATAGTGTTTTGTTCAACAACACAAGTGGAAACCTCT 419
Query 398 AGTGAAGATCCAAAGATATGGGAAGAATGCAAAGAAGCTCTGTCTTGTTTTGATTTCAGT 457
| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 AATGAAGATCCAAATATATGGGAAGAATGCAAAGAAGCTTTGTCTTGTTTTGATTTCAGT 479
Query 458 GTAGAGGAGAAAGACAAGATACTAGGAAAAGCGTTTGGTCATATCCACTCTCCGTACTGG 517
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 GTTGAGGAGAAAGACAAGATACTAGGGAAAGCGTTTGGTCATATCCACTCTCCGTACTGG 539
Query 518 ACCGAAGAACGAGTGAAAGAGAATCCGAAA-GTGGAAACTTTGAATCAAATACTAGAGTT 576
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 540 ACCGAAGAACGAGTGAAAGAGAATCC-AAAGGTGGAAACTTTGAATCAAATACTAGAGTT 598
Query 577 CCTTAGAAGTCTCGGTTTATCGGACGAAGATCTGCATAAGGTGATGAAGAAATTCCCGGA 636
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 599 CCTTAGAAGTCTTGGTTTATCAGACGAAGATCTTCATAAGGTGATGAAGAAATTCCCGGA 658
Query 637 AGTACTTGGTTGCAGTCTTGAAGAGGAGATGAAACCAAACATTGGGATTTTGGAAAACCA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTACTTGGTTGCAGTCTTGAAGAGGAGATGAAACCAAACATTGGGATTTTGGAAAACCA 718
Query 697 ATGGGGAATTACGGGTAAGCAACTACGAAATCTGTTGCTTCGGAACCCGAAAGTGTTGGG 756
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 ATGGGGGATTACGGGTAAGCAACTACGAAATCTGTTGCTTCGGAATCCGAAAGTGTTGGG 778
Query 757 ATACAATGTGGATTGTAAAGGAGATTGTGTTGCGCAATGCACTCGTTGTTGGGTTCGGTT 816
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 779 ATATAATGTGGATTGTAAAGGAGATTGTGTTGCTCAATGCACTCGGTGTTGGGTTCGGTT 838
Query 817 CTAGT 821
||||
Sbjct 839 TTAGT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5