BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489817
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09650.1 | Symbols: ATPD | ATP synthase delta-subunit gene |... 1170 0.0
> AT4G09650.1 | Symbols: ATPD | ATP synthase delta-subunit gene
| chr4:6100743-6101708 FORWARD LENGTH=966
Length=966
Score = 1170 bits (633), Expect = 0.0
Identities = 799/871 (92%), Gaps = 44/871 (5%)
Strand=Plus/Plus
Query 1 CAACAACAATGGCGTCTCTTCAACAAACTCTATTCTCTCTTCAATCAAAACTCCCACCAT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 49 CAACAACAATGGCGTCTCTTCAACAAACTCTATTCTCTCTTCAATCCAAACTCCCACCAT 108
Query 61 CCTCCTTCCAAATCGCCAGATCTCTCCCTCTCCGAAAAACCTTCCCAATCCGAATCAACA 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 109 CCTCCTTCCAAATCGCCAGATCTCTCCCACTCCGAAAAACCTTCCCAATCCGAATCAACA 168
Query 121 AC---GGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ACGGTGGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 228
Query 178 CTTTAGCAGACGTCGCTAAAAGAAACGACACAATGGAATTAACAGTCGCCGACATCGAAA 237
| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 229 CATTAGCAGACGTCGCGAAAAGAAACGACACAATGGAATTAACAGTCACAGACATCGAGA 288
Query 238 AACTCGATCAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 297
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AGCTCGAACAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 348
Query 298 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATCGTGAAATCATCATCTCTTCAATCTC 357
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 349 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATAGTGAAATCGTCGTCTCTTCAATCTC 408
Query 358 ATACCTCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 417
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACACATCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 468
Query 418 TTGTTAAAGAGTTTGAATTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 477
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCGTTAAGGAGTTTGAGTTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 528
Query 478 GGTCGGTGGTGAAATTGGAACCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 529 GGTCGGTGGTGAAATTGGAAGCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 588
Query 538 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATCCGAGTCTTGTGGCTGGTT 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATGCGAGTCTTGTGGCTGGTT 648
Query 598 TTACGATTCGGTATGGTGATTCCGGTTCGAAGCTTATTGATATGAGTGTTAAGAAGCAGC 657
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 649 TTACGATTCGGTATGGTGAATCCGGTTCGAAGCTTATTGATATGAGTGTGAAGAAACAGC 708
Query 658 TTGAAGATATTGCT-CAACAACTTGAACTTGGTGAGATTCAATTAGCTACTTGA-A---G 712
|||||||||||||| | || ||||||||||||||||||||||||||||||||| | |
Sbjct 709 TTGAAGATATTGCTTCT-CAGCTTGAACTTGGTGAGATTCAATTAGCTACTTGAGATTTG 767
Query 713 AGAAA--TT-T----GAGAA---T--G-G--t-tttttttttt-t-----ttt--tcttc 748
|||| || | ||||| | | | | |||||||||| | ||| | ||
Sbjct 768 GGAAAAATTGTATAAGAGAAAAATTTGAGAATCTTTTTTTTTTGTGCAAGTTTAATTTTT 827
Query 749 tt-ct--tc-t-t-ctttctctATTAATCAATCATATAATATAC--T---GATGATATAA 797
|| || || | | |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 828 TTTCTCCTCATCTTCTTTCTCTATTAATCAATCATATAATATACAGTACTGATGATATAA 887
Query 798 TAATAATTCTGAGTTTATTATCTTTGTAATT 828
|||| ||||||||||||||||||||||||||
Sbjct 888 TAATGATTCTGAGTTTATTATCTTTGTAATT 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5