BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489838 Length=517 Score E Sequences producing significant alignments: (Bits) Value AT4G09890.1 | Symbols: | Protein of unknown function (DUF3511)... 664 0.0 > AT4G09890.1 | Symbols: | Protein of unknown function (DUF3511) | chr4:6218396-6218927 FORWARD LENGTH=532 Length=532 Score = 664 bits (359), Expect = 0.0 Identities = 486/541 (90%), Gaps = 34/541 (6%) Strand=Plus/Plus Query 1 GCTTCTCCACTCACATAGCTATAACAAGAGAGAGAGATAGACATAGGGCAAAAATTATTT 60 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1 GCTTCTTCACCCACATAGCTATAACAAGAGAGAGAGATAGACATAGAGCAAAAATTAGTT 60 Query 61 TCTTAGAAGTT------GC-AA-A--AG---CAAAGAGCCTAAAGATGATGAAGGGAAGC 107 ||||||||||| | || | || ||||||||||||||||||||||||||||| Sbjct 61 TCTTAGAAGTTACAAAATCAAAGATCAGAACCAAAGAGCCTAAAGATGATGAAGGGAAGC 120 Query 108 AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACCGATGAATTTGGTTATGATCAGAAC 167 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACAGATGAATTTGGTTATGATCAGAAC 180 Query 168 CGCTCAAACTCTTATAACTTCAATGGGCCTTGCATCAACACAGATCCAGAGATGAAGAGA 227 || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 181 CGTTCAAACTCCTATAACTTCAATGGGCCTTGTATCAACACAGATCCGGAGATGAAAAGA 240 Query 228 AAGAAGAGAGTTGCTTCTTATAATCTCTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC 287 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 AAGAAGAGAGTTGCTTCTTATAATCTTTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC 300 Query 288 AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC 360 Query 348 AACGTCTAGATTACTCCActttgatcttctgatctttttcttcttcttctttctattttt 407 ||||||||||||| ||||||||| || ||||||||||| || | |||| || |||| Sbjct 361 AACGTCTAGATTAGTCCACTTTGCTC--CTGATCTTTTTATT-T-CTTC---CT-TTTT- 411 Query 408 ATTACACTAA-AGTCGTAGTGAAACTTAACATGTAAATTAAGTGTGT-ATCTTGTGTATG 465 |||||||||| | || |||||||||||||||||||||| |||||||| | ||||||||| Sbjct 412 ATTACACTAAGA-TCTTAGTGAAACTTAACATGTAAATAAAGTGTGTGAGATTGTGTATG 470 Query 466 TGTGT-T-T------AA-GATTTGTATGTTACTCAAATGGAAATGTCAATTTGGTTTAAT 516 ||||| | | || | ||||||||||||||||||||||||||||||||| |||||| Sbjct 471 TGTGTGTGTGTGTCTAAAGTTTTGTATGTTACTCAAATGGAAATGTCAATTTGCTTTAAT 530 Query 517 T 517 | Sbjct 531 T 531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24715200324 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5