BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489838

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09890.1 | Symbols:  | Protein of unknown function (DUF3511)...   664    0.0  


> AT4G09890.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr4:6218396-6218927 FORWARD LENGTH=532
Length=532

 Score =  664 bits (359),  Expect = 0.0
 Identities = 486/541 (90%), Gaps = 34/541 (6%)
 Strand=Plus/Plus

Query  1    GCTTCTCCACTCACATAGCTATAACAAGAGAGAGAGATAGACATAGGGCAAAAATTATTT  60
            |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct  1    GCTTCTTCACCCACATAGCTATAACAAGAGAGAGAGATAGACATAGAGCAAAAATTAGTT  60

Query  61   TCTTAGAAGTT------GC-AA-A--AG---CAAAGAGCCTAAAGATGATGAAGGGAAGC  107
            |||||||||||       | || |  ||   |||||||||||||||||||||||||||||
Sbjct  61   TCTTAGAAGTTACAAAATCAAAGATCAGAACCAAAGAGCCTAAAGATGATGAAGGGAAGC  120

Query  108  AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACCGATGAATTTGGTTATGATCAGAAC  167
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  AAGTCTTACACGGAGTATTCGTCATCTTTCTCAACAGATGAATTTGGTTATGATCAGAAC  180

Query  168  CGCTCAAACTCTTATAACTTCAATGGGCCTTGCATCAACACAGATCCAGAGATGAAGAGA  227
            || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct  181  CGTTCAAACTCCTATAACTTCAATGGGCCTTGTATCAACACAGATCCGGAGATGAAAAGA  240

Query  228  AAGAAGAGAGTTGCTTCTTATAATCTCTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC  287
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  AAGAAGAGAGTTGCTTCTTATAATCTTTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTC  300

Query  288  AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTAC  360

Query  348  AACGTCTAGATTACTCCActttgatcttctgatctttttcttcttcttctttctattttt  407
            ||||||||||||| ||||||||| ||  ||||||||||| || | ||||   || |||| 
Sbjct  361  AACGTCTAGATTAGTCCACTTTGCTC--CTGATCTTTTTATT-T-CTTC---CT-TTTT-  411

Query  408  ATTACACTAA-AGTCGTAGTGAAACTTAACATGTAAATTAAGTGTGT-ATCTTGTGTATG  465
            |||||||||| | || |||||||||||||||||||||| |||||||| |  |||||||||
Sbjct  412  ATTACACTAAGA-TCTTAGTGAAACTTAACATGTAAATAAAGTGTGTGAGATTGTGTATG  470

Query  466  TGTGT-T-T------AA-GATTTGTATGTTACTCAAATGGAAATGTCAATTTGGTTTAAT  516
            ||||| | |      || | ||||||||||||||||||||||||||||||||| ||||||
Sbjct  471  TGTGTGTGTGTGTCTAAAGTTTTGTATGTTACTCAAATGGAAATGTCAATTTGCTTTAAT  530

Query  517  T  517
            |
Sbjct  531  T  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24715200324


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5