BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489866
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10180.1 | Symbols: DET1, FUS2, ATDET1 | light-mediated deve... 2645 0.0
> AT4G10180.1 | Symbols: DET1, FUS2, ATDET1 | light-mediated development
protein 1 / deetiolated1 (DET1) | chr4:6346463-6349276
FORWARD LENGTH=1842
Length=1842
Score = 2645 bits (1432), Expect = 0.0
Identities = 1670/1782 (94%), Gaps = 28/1782 (2%)
Strand=Plus/Plus
Query 1 CTCCCATCGTCTCCTCCATTTTCACCACTAAAACCAGAACACAAACCTTCCTTTATT-GT 59
||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 3 CTCACATCGTCTCCTCCATTTTCACCACTAAAACCAGACCAAAAACCTTCCTTTATTCGT 62
Query 60 GCCCTTTTGGGCCAACAAATGTTCACAAGCGGTAACGTCACCGCTAGGGTTTTCGAACGT 119
|||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 63 GCCCTTCTGGGCCAACAAATGTTCACAAGCGGTAACGTCACCGCTCGGGTCTTCGAACGT 122
Query 120 CAGATTCGTACTCCTCCTCCCGGCGCTTCCGTAAATCGCGCAAGACACTTCTACGAAAAC 179
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 CAGATTCGAACTCCTCCTCCCGGCGCTTCCGTAAATCGTGCAAGACACTTCTACGAAAAC 182
Query 180 CTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTC 242
Query 240 ACAGAAGACGGACTCTTCCTCATTAGTTTCAGCCGTAACCACCAAGAACTCATAGTCTAT 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 ACAGAAGACGGACTCTTCCTCATTAGTTTCAGCCGTAACCATCAAGAACTCATAGTCTAT 302
Query 300 CGTCCTTCTTGGCTCACATATTCAACAACCTCCGATGA-T-GATGA--TTCC-A-CTCCT 353
||||||||||||||||| || || |||| ||||||| | | | || | |||||
Sbjct 303 CGTCCTTCTTGGCTCACTTACTCCACAA---CCGATGATTCCACAACCACCCTACCTCCT 359
Query 354 CTACCTCGCCGTGCTTCGAAATTCGATAGCTTCTTCACTCAACTCTACTCAGTCAATCTT 413
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 360 CTACCTCGCCGTGCTTCGAAATTCGACAGCTTTTTCACTCAACTCTACTCAGTCAATCTC 419
Query 414 GCTTCATCGAACGAACTTATCTGCAAAGACTTCTTCCTCTACCACAAAACTCGTCGTTTC 473
||||| || |||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 420 GCTTCTTCTAACGAACTCATCTGCAAAGACTTCTTCCTCTATCACCAAACTCGTCGTTTC 479
Query 474 GGTCTTTTCGCTACTTCAACAGCTCAGATCCATGA-T--TCATCTCCTACTAATGACGCG 530
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 480 GGTCTTTTCGCTACTTCAACAGCTCAGATCCATGATTCATCATCTCCTTCTAATGACGCT 539
Query 531 GTTCCTGGTGTTCCATCGATTGATAAGATCACTTTCCTACTTCTTCGATTAGATGATGGT 590
|||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 540 GTTCCTGGTGTTCCTTCCATTGATAAGATTACTTTCGTACTTCTTCGATTAGATGATGGT 599
Query 591 GATGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTCAATTTGGCTCATAATATGGGT 650
| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 600 GTTGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTTAATCTGGCTCATAATATGGGT 659
Query 651 GTGTTTCTCTATGATGATCTTTTAGCGATTCTATCGTTGCGTTATCAGAGGATTCATCTT 710
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 660 GTGTTTCTTTATGATGATCTTTTAGCGATTTTGTCGTTGCGTTATCAGAGGATTCATCTT 719
Query 711 CTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCTATTGGTTACTTTTGTCGT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCTATTGGTTACTTTTGTCGT 779
Query 771 GAAGATGATGAGCTTTTCCTCAATTCGAGTTCTCAGGCAATGATGAGTCAAGATAAGAAC 830
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 780 GAAGATGATGAGCTTTTCCTCAATTCTAGCTCTCAGGCAATGATGAGTCAAGATAAGAGT 839
Query 831 AAACAGCAAAGTTTATCGGGGAATAAGGATGACGATGATGTTGCG-GAGAATGGGTTGCA 889
|||||||| |||||||| |||| |||||| | |||||| || | |||||||||||||
Sbjct 840 AAACAGCAGAGTTTATCTGGGAGTAAGGA--A-GATGATACTG-GAGAGAATGGGTTGCG 895
Query 890 TTGTAGTC-A-GCCTCAGCCGAA-TGCTACGAATTCGTTTCTTAGTGGTATTAAGCAACG 946
| ||||| | | |||||| || || | |||||||||||||||||||| ||||||||||
Sbjct 896 TCATAGTCTAAG--TCAGCC-AAGTGGTTCGAATTCGTTTCTTAGTGGTGTTAAGCAACG 952
Query 947 ATTACTTTCTTTTATCTTCAGGGAGATTTGGAATGAAGAATCGGATAATGTACTGAGGGT 1006
||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 953 GTTACTTTCTTTTATCTTCAGGGAGATTTGGAATGAAGAATCAGATAACGTAATGAGAGT 1012
Query 1007 TCAAAGTCTTAAGAAGAAGTTCTATTTCCATTTCCAGGATTATGTCGACTTGATTATTTG 1066
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1013 TCAAAGTCTTAAGAAGAAGTTTTATTTCCATTTCCAGGATTATGTCGACTTGATTATATG 1072
Query 1067 GAAGGTTCAGTTTTTGGATCGACAACACCTGCTACTCAAATTTGGCAGTGTAGATGGTGG 1126
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1073 GAAGGTTCAGTTTTTGGATCGACAACACCTGCTAATCAAATTTGGAAGTGTAGACGGTGG 1132
Query 1127 GGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTTGCGGTGTATAATATGGAGACAAC 1186
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1133 GGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTAC 1192
Query 1187 TGACATTGTAGCATTCTATCAGAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTT 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGACATTGTAGCATTCTATCAGAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTT 1252
Query 1247 CAGTGATCACTTTACCGTATCAAGTAGTACACCATTCATGAACTTTGTAACATCGCATTC 1306
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1253 CAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGAACTTTGTAACATCGCATTC 1312
Query 1307 TAACAGCGTCCATGCTCTGGAACAACTAAAGTACATGAAGAACAAATCAAACAGTTTTTC 1366
||||| |||| |||| || ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1313 TAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGAACAAATCAAACAGTTTTTC 1372
Query 1367 TCAGTTTGTGAAGAAGATGTTGCTCTCTTTACCTTTCAGTTGTCAGTCACAAAGTCCCTC 1426
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1373 TCAGTTTGTGAAGAAGATGTTACTCTCTTTGCCTTTCAGTTGTCAGTCACAAAGTCCCTC 1432
Query 1427 CCCATATTTCGACCAATCTCTCTTCCGGTTCGATGAAAAGTTAATTTCCGCAGCAGATAG 1486
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1433 CCCATATTTCGACCAGTCTCTCTTCCGGTTCGATGAAAAGTTAATATCCGCAGCAGATAG 1492
Query 1487 GCATAGGCAATCCTCAGACAATCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACGCT 1546
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1493 GCATAGGCAATCCTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACCCT 1552
Query 1547 GAAATTCAAGATAAAACCAGGACCAGAGTGTGGAACTGCAGATGGTCGGAGCAAGAAGAT 1606
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1553 GAAATTCAAGATAAAACCAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGAT 1612
Query 1607 ATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTT 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTT 1672
Query 1667 CATGCCGCCTTCTGTCGTCAATATCCATTTTCGGCGATGACCTCTTGTGGGTTCC-ATCA 1725
|||||| |||||||||||||||||||||||| ||||||||| |||| | |||| | ||||
Sbjct 1673 CATGCCACCTTCTGTCGTCAATATCCATTTTAGGCGATGAC-TCTTTTTGGTTTCTATCA 1731
Query 1726 GTCTAGTAGTCTGTC-TACATGTTGTAATCTATTGTTTGTAA 1766
|||||||||||| || ||||||||||||||||||||||||||
Sbjct 1732 GTCTAGTAGTCT-TCCTACATGTTGTAATCTATTGTTTGTAA 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5