BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489908 Length=1416 Score E Sequences producing significant alignments: (Bits) Value AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting ... 2220 0.0 AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1... 647 0.0 > AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting domain 12 | chr4:6557237-6559487 FORWARD LENGTH=1454 Length=1454 Score = 2220 bits (1202), Expect = 0.0 Identities = 1349/1419 (95%), Gaps = 14/1419 (1%) Strand=Plus/Plus Query 1 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 70 Query 61 ATTTCTGGGTTTTGTTCGAAATTTTCTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 120 ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 71 ATTTCTGGGTTTTGTTCGA--TTTTGTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 128 Query 121 TACTACGGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 180 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 TACTACTGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 188 Query 181 AGAATCAGGAGTCT-CTTCTAACAACGATCACGGTGGAAATGAAATCCACGGTGAGATCG 239 ||||||||||| || ||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 189 AGAATCAGGAG-CTTCTTCTAACAACGATCACGGTGGAAATGGAATCCATGATGAGATCG 247 Query 240 GAGTCCACGTGGCGAGATCCGACGGTGATGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 299 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 248 GAGTCCACGTGGCGAGATCCGACGGTGGTGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 307 Query 300 ATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTTCCTCCTTCACTCACTA 359 | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| Sbjct 308 ACGAGCTCTTGTCTAAGCTTAATCCTATGGCTAAAGAGTTTATTCCTCCTTCACTTACTA 367 Query 360 AGCCAGTTGTTAATGGTTTTAACGGTGGTTTCTTCGCCGTTAATAATGGCTTTGGTGCTG 419 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 368 AGCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTG 427 Query 420 CCGGAAATTTCCCCGTTAACGAAGACGGTGGTTTTCGCCGTAAGAAGTCGTTCGGACAAC 479 |||||||||||||||| |||||||||||| | ||||| || ||||||||||||||||||| Sbjct 428 CCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGAAGAAGTCGTTCGGACAAC 487 Query 480 AAGGGAAAAGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATTCGAA 539 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 488 AAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAA 547 Query 540 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 607 Query 600 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 667 Query 660 GGTTTGCTTTCATTGAGTTCACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTG 719 ||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||| Sbjct 668 GGTTTGCTTTCATCGAGTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTG 727 Query 720 GGACGATGCTGGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 779 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 GGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 787 Query 780 TTAACCCGACATTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCT 839 ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 788 TTAACCCAACCTTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCT 847 Query 840 ACTGCACTAACATCGACAAGAAGCTCACTCAAGCAGACATAAAACTCTTTTTTGAGTCTG 899 ||||||||||||| |||||||||||||||||| | ||||| |||||||| |||||||||| Sbjct 848 ACTGCACTAACATTGACAAGAAGCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTG 907 Query 900 TGTGTGGAGAGGTGTACCGTCTGAGGCTGCTCGGCGATTATCATCATCCAACTCGCATTG 959 ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 908 TGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCG 967 Query 960 GTTTTGTGGAGTTTGTCATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCC 1019 | || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| Sbjct 968 GCTTCGTGGAGTTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCC 1027 Query 1020 TTCTTGGCTCTTTACCGATAAGGGTGAGTCCGTCAAAGACACCTGTTCGTTCCCGTGCTG 1079 ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1028 TTCTTGGTTCTTTACCGATAAGGGTGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTA 1087 Query 1080 TCCCGCGACAACAAATGCATTAACCGTAGTAGCTACAAGTTTTATAAATATTTCTGCTCC 1139 |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1088 TCCCGCGACATCAAATGCATTAACCGTAG---CTACAAGTTTTATATATATTTCTGCTCC 1144 Query 1140 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTTTGTTTTCCCTTATGTA 1199 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1145 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTCTGTTTTCCCGTATGTA 1204 Query 1200 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1264 Query 1260 AGGTTTTTTCGATTTGGGTTCTTACGTTTAGAAGTT-ACACAGAGCAGAAGAGTATAAAA 1318 || |||||||||||||||||| ||||||||| |||| |||||||||||||||||| ||| Sbjct 1265 AG-TTTTTTCGATTTGGGTTCCTACGTTTAGTAGTTTACACAGAGCAGAAGAGTA-AAAC 1322 Query 1319 GACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTT-AGTTATTTATACTCTCTTACCCC 1377 ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| Sbjct 1323 -ACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTTTAGTTATTTATACTCT-T-ACCCC 1379 Query 1378 TGAAGTTATTAGAAACTTGCTTTTGTGCTTAAATGTTTC 1416 ||||||||||||||||||||||| ||||||||| ||||| Sbjct 1380 TGAAGTTATTAGAAACTTGCTTTGGTGCTTAAAAGTTTC 1418 > AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:11874704-11877387 REVERSE LENGTH=1744 Length=1744 Score = 647 bits (350), Expect = 0.0 Identities = 708/874 (81%), Gaps = 51/874 (6%) Strand=Plus/Plus Query 234 AGATCGGAGTC-CACGTGGCGAGATCCGAC-G-G-TGA------TGAGAGTTTTAAGCGT 283 ||||||| ||| |||||||||||||||||| | | ||| |||||| ||||||||| Sbjct 384 AGATCGG-GTCACACGTGGCGAGATCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGT 442 Query 284 GATATGAGAGAGCTTCATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTT 343 ||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||| Sbjct 443 GATATGAGAGAGCTTCAGGAGCTTTTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTT 502 Query 344 CCTCCTTCACTCACTAAGCCAGTTGTTAATGGTTTTAACGGTGG--T-TT---CT-T-C- 394 |||||||| || | ||| | || | ||| ||| |||||||||| | || || | | Sbjct 503 CCTCCTTCTCTGAATAAACAAGGAGGTAACGGTGTTAACGGTGGTTTCTTCACCTCTGCT 562 Query 395 -G--CC--GTT----AATAATGGCTTTGGTGCTGCCGGAAATTTC---CCCGTTAACGAA 442 | || || || |||||||||| || | |||||||| | || ||||||| Sbjct 563 GGTTCCTTCTTCCGCAACAATGGCTTTGCTGGTACCGGAAATGGCGGATACGGTAACGAA 622 Query 443 GACGGTGGTTTTCGCCGTAAGAAGTCG-TTCGGACAACAAGGGAAAAGGAGAATGAATCC 501 |||||||||| || || |||||| | || || ||||||||| | || |||||| | Sbjct 623 AACGGTGGTTTCCGACGGAAGAAG-AGTTTTGG---TCAAGGGAAACGAAGGATGAATGC 678 Query 502 TAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATTCGAAGAACTGTCTATGTGTCTGATA 560 | | ||||| |||||||||| ||||| | | || || ||||| ||||| || |||||| Sbjct 679 TCGAACAAGCATGGCTCAGCGAGAAGATG-TTATCCGTAGAACCGTCTACGTCTCTGATC 737 Query 561 TTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAGGTT 619 | || |||||||||||||| ||||||||||||||||||||| | | ||| |||||||||| Sbjct 738 TCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAGGTT 796 Query 620 GTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATTGAGTT 678 ||||||||||| ||||| ||||| ||| ||||| || ||| ||||||| ||||| ||||| Sbjct 797 GTTGACTGTCGCATATGCGGTGA-CCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTT 855 Query 679 CACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTGGGACGATGCTGGGATTCTA 738 ||||||||||| |||||| | | |||| || | ||| || ||||| ||| |||||||||| Sbjct 856 CACTGATGAAGAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTA 915 Query 739 TCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCGACATTCTTGCC 798 ||||||||| ||| | || || || |||||||| |||||||||||||||||||| ||||| Sbjct 916 TCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCC 975 Query 799 AAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGCACTAACATCGACAA 858 ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 976 TAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAA 1035 Query 859 GAAGCTCACTCAAGCAGACATAAA-ACTCTTTTTTGAGTC-TGTGTGTGGAGAGGTGTAC 916 |||| | |||||| ||||| | || | ||||||||||||| | | || |||||||| || Sbjct 1036 GAAGGTGACTCAATCAGACGTGAAGA-TCTTTTTTGAGTCCT-TCTGCGGAGAGGTTTAT 1093 Query 917 CGTCTGAGGCTGCTCGGCGATTATCATCA-TCCAACTCGCATTGGTTTTGTGGAGTTTGT 975 || ||||||||||| || |||||||| || || | |||| |||| |||||| ||||| || Sbjct 1094 CGCCTGAGGCTGCTTGGAGATTATCAACACTCGA-CTCGTATTGCTTTTGTAGAGTTCGT 1152 Query 976 CATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCCTTCTTGGCTCTTTACC 1035 ||||| ||||| || ||||||||||| ||||||||||| || ||||||| |||||||| Sbjct 1153 AATGGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACC 1212 Query 1036 GATAAGGGTGAGTCCGTCAAAGACACCTGTTCGT 1069 |||||| | | ||| |||||||| ||||||||| Sbjct 1213 TATAAGG-TCA-TCCTTCAAAGACGCCTGTTCGT 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69778757550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5