BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489914
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478 ... 833 0.0
AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488 ... 745 0.0
AT4G10700.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 348 4e-95
> AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478
REVERSE LENGTH=705
Length=705
Score = 833 bits (451), Expect = 0.0
Identities = 565/619 (91%), Gaps = 12/619 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTATC-TCGTCCTAAGAGATAACATTCGTGCGTCGGCTGTCTG-CAAGGCATGGC 58
|||||||||| | || ||| ||||||||||||||| || || ||||| | | |||||||
Sbjct 1 ATGTCTTATCTTGGT-TTAAAAGATAACATTCGTGCATCCGCGGTCTGCCGA-GCATGGC 58
Query 59 GTAAAGCGGCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGA 118
||||||| |||||||| |||||||||||||| |||||||| |||||||||| |||||||
Sbjct 59 GTAAAGCCGCTGAATCAGTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAGCTTTCCG- 117
Query 119 AG-CATGACGGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAAT 177
|| ||| ||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 118 AGACATTACGGCGTGACTATTCTCTTCGATCCATTGGGAAGGAAGAGTTACACACTGAAT 177
Query 178 TTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCG 236
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 178 TTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCG 236
Query 237 AAGATCCGGTTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTT 296
||||||| |||||||||||||||||||| ||||||| |||||| | ||||||||||||||
Sbjct 237 AAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCTTATAAACTT 296
Query 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCAATTGCTTTCTCTTCAGCT-CCTACATCAGGTA 355
||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||
Sbjct 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCTGTTGCTTTCTCTTC-GGTACCTACATCAGGTA 355
Query 356 CTTGTGTGGTAATAGCACTAAGACCTTTTACGAGATTTGTCATTCGTATTAGCATTTGC- 414
|||||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 356 CTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAAGCATTTGCT 415
Query 415 TACCTTGGAGCAACTGAGTGGGTTACTCAAGATTTTTCTTGCTCTCACGGATTTGACCCA 474
| || |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 416 TTCC-TGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTTGAGCCG 474
Query 475 TACATGCATAGCAACCTTGTCTATGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGT 534
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 475 TACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCGGGAGGT 534
Query 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGTATGGAATGAACAT 594
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACAT 594
Query 595 AGATGCCCTTATATGCATA 613
| |||||||||||| ||||
Sbjct 595 ATATGCCCTTATATTCATA 613
> AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488
FORWARD LENGTH=954
Length=954
Score = 745 bits (403), Expect = 0.0
Identities = 499/546 (91%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 67 GCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGAAGCATGAC 126
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 25 GCTGAATCAGTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGAA 84
Query 127 GGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAATTTACCCGAG 186
| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 85 GACTTGACTTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCCGAG 144
Query 187 TTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCGAAGATCCGG 245
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 145 TTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCGAAGATCCAG 203
Query 246 TTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTTGCCAAAGTG 305
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 204 TTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAGTG 263
Query 306 TGAGTTGTCCTTTCAGGCAATTGCTTTCTCTTCAGCTCCTACATCAGGTACTTGTGTGGT 365
||||||| ||||||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 264 TGAGTTGGCCTTTCAAGCGATTGCTTTCTCTTCGGCCCCTACATCAGGTACTTGTGTGGT 323
Query 366 AATAGCACTAAGACCTTTTACGAGATTTGTCATTCGTATTAGCATTTGCTA-CCTTGGAG 424
|||| ||||||||||||| |||| | |||| ||||| ||||||||||| || |||||
Sbjct 324 GTTAGCGTTAAGACCTTTTACAAGATATATCATCCGTATAAGCATTTGCTATCC-TGGAG 382
Query 425 CAACTGAGTGGGTTACTCAAGATTTTTCTTGCTCTCACGGATTTGACCCATACATGCATA 484
||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 383 CAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGATTTGACCCATACATGCATA 442
Query 485 GCAACCTTGTCTATGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGTGTTTTAGTTG 544
||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||||
Sbjct 443 GCAACCTTGTCTATGCCAACGATCACTTCTATTGTTTTAGCTCAGGAGGTGTTTTAGTTG 502
Query 545 ACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGTATGGAATGAACATAGATGCCCTT 604
|||||||| |||||||||||||||||||| | |||| ||||||||||||||||||| |||
Sbjct 503 ACTTTGATGTAGCTTCCCGCACAATGAGTGAACAAGCATGGAATGAACATAGATGCGCTT 562
Query 605 ATATGC 610
||||||
Sbjct 563 ATATGC 568
> AT4G10700.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: CDC68-related (TAIR:AT4G10660.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr4:6597863-6598658
REVERSE LENGTH=744
Length=744
Score = 348 bits (188), Expect = 4e-95
Identities = 225/243 (93%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 67 GCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGAAGCATGAC 126
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 25 GCTGAATCAGTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGAA 84
Query 127 GGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAATTTACCCGAG 186
| | ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 85 GACATGACTTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCCGAG 144
Query 187 TTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCGAAGATCCGG 245
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 145 GTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCGAAGATCCAG 203
Query 246 TTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTTGCCAAAGTG 305
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 204 TTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAGTT 263
Query 306 TGA 308
|||
Sbjct 264 TGA 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5