BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489923 Length=1598 Score E Sequences producing significant alignments: (Bits) Value AT4G10790.1 | Symbols: | UBX domain-containing protein | chr4:... 2172 0.0 > AT4G10790.1 | Symbols: | UBX domain-containing protein | chr4:6640599-6643062 REVERSE LENGTH=1623 Length=1623 Score = 2172 bits (1176), Expect = 0.0 Identities = 1495/1639 (91%), Gaps = 61/1639 (4%) Strand=Plus/Plus Query 1 GGAAAATCAAATTAGGGTTTTGC-GATAATGGTTGATACTGTCGACAAATTAGGTTACTT 59 |||||||| |||||||||||| | || ||||||||||||||| ||||||||||||||||| Sbjct 1 GGAAAATCGAATTAGGGTTTT-CTGAAAATGGTTGATACTGTTGACAAATTAGGTTACTT 59 Query 60 CCAAGCGATTACAGGTCTTGAAGATGCCGATTTGTGCACTGAGATCCTTCAAGCTCATGG 119 |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 60 CCAAGCGATTACAGGTCTCGAAGATGCTGATTTGTGTACTGAGATCCTTCAAGCTCATGG 119 Query 120 TTGGGACCTAGAACTCGCAATCTCTTCATTCACATCTTCTGATCATGACGCTTCGTCTTC 179 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 120 TTGGGACCTAGAACTAGCAATCTCTTCATTCACATCTTCTGATCAAGACGCTTCGTCTTC 179 Query 180 CGCCGCCG-TCGATGGTGGTAACAATCACGATCACGATCACGATAACGCCGCCGTGACTC 238 ||||| || | | |||||||||||||| ||||||||||||| |||||||| ||||||||| Sbjct 180 CGCCGTCGAT-GGTGGTGGTAACAATCGCGATCACGATCACAATAACGCCACCGTGACTC 238 Query 239 CTGATTATCAACCTCGTGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CTGATTATCCACCTCGCGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298 Query 299 GAGGCAATCGAGGTCCTGGAGTGGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358 |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 299 GAGGAAATCGAGGTCCAGGAGTTGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358 Query 359 CTGGTAGCTTAGGGTTAGTTTCCGGAGCGATCGGGTTAGGGATTTGGGCTGCTGGTGGTG 418 |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| Sbjct 359 CTGGTAGCTTAGGGTTAGTTTCTGGAGCGATCGGGTTAGGTATTTGGGCCGCTGGTGGTG 418 Query 419 TTTTATCGTATTCCT-TTGGTATGTTAGGGTTTAGATCAGGGAGAGGTGGTGGTTCGGCG 477 |||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct 419 TTTTATCGTATT-CTCTTGGTATGTTAGGGTTTAGATCAGGGAGA---GGTGG-T----- 468 Query 478 GGTTCGTCGTCGTCGGCTCGGCTTGTTTCGGTTTCTTCGGCTGCTGGTGAAGCGATGGAG 537 |||||| | |||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 469 GGTTCG--G-AATCGGCTCGGCTTGTTTCGGTTTCTTCTGCTGTTGGTGAAGCGATGGAG 525 Query 538 TTTGTTGCTTTGTTTGATAGAGATTATTGGAGTAATAATAATGCTTTTAAGATTGATTTT 597 |||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||| Sbjct 526 TTTGTTGCTTTGTTTGATAGAGATTA-TGG-G-AGTAATAATGCTTTTAAGATTGATTTT 582 Query 598 GTAGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGCTCGTTTAAGCTCTTGTTT 657 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 583 GTTGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGTTCGTTTAAGCTCTTGTTT 642 Query 658 GTTTACTTGCATTCTCCGGATCATCCTGATACGCCTATGTTTTGTGATGGGACGCTTTGT 717 |||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| Sbjct 643 GTTTACTTGCATTCTCCGGATCATCCTGATACACCTGTGTTTTGTGGTGGAACGCTTTGT 702 Query 718 AATGAAGCGGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 777 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 AATGAAGCCGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 762 Query 778 TCTAGTGAAGGATTTAAGATGAGTAATAGCTTGAAAGCATCGAGGTTTCCGTTTTGCGCT 837 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 763 TCTAGTGAAGGGTTTAAGATGAGTAATAGCTTGAAGGCATCGAGGTTCCCGTTTTGCGCT 822 Query 838 GTTGTTATGCCTGCTGCTAATCAGAGAATTGCTCTTCTTCAGCAGGTTGAGGGACCAAAA 897 || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 823 GTGGTTATGCCTGCTGCTAACCAGAGAATTGCTCTTCTTCAGCAGGTCGAGGGACCAAAA 882 Query 898 TCTCCAGAAGAAATGCTTGCTATACTACAGAGAGTTGTAGAAGATAGTTCACCTACCCTG 957 ||||| ||||| |||||||| ||||| |||||| ||||||||||||| |||||||| || Sbjct 883 TCTCCGGAAGAGATGCTTGCCATACTCCAGAGAATTGTAGAAGATAGCTCACCTACTTTG 942 Query 958 GTAACTGCTAGGGTTGAGGCAGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1017 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 943 GTAACTGCTAGGGTTGAGGCGGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1002 Query 1018 GATGCTGCTTACCGGGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCGAGAGAGACGGGAA 1077 |||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||| Sbjct 1003 GATGCTGCTTACCGTGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCAACAGAGACAGGAG 1062 Query 1078 GAGGAAGAACGTTTAGAGAGGGAAGCTGCTGAGG-A-A-A--AA-------GA-G--G-- 1120 ||| |||| ||||||||||| ||||||||||||| | | | || || | | Sbjct 1063 GAGAAAGAGCGTTTAGAGAGAGAAGCTGCTGAGGCAGAGAGGAAACTCAAAGAAGAAGAA 1122 Query 1121 ----CTCAGgagagagcagaacgtgaagctgcagagaaagaagctgctagagtgagaatg 1176 ||| ||||||||||| |||||||||| ||||| | |||||||||||||| ||||| Sbjct 1123 GAGGCTCGGGAGAGAGCAGCGCGTGAAGCTGAAGAGAGACAAGCTGCTAGAGTGCGAATG 1182 Query 1177 agacaagagaaagCACTTGCTATTGGAGATGAACCTGAGAAAGGCCCTGATGTTACACAA 1236 |||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1183 AGACAAGAGAAAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAA 1242 Query 1237 GTTTTGGTACGGTTCCCGAATGGAGAAAGGAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1296 || || || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1243 GTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1302 Query 1297 ATCCAGACATTGTACGACTACGTTGATTCACTTGGAGTCTTAGATACAGAAGAGTACAGC 1356 |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1303 ATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCTTAGATACAGAAGAGTACAGC 1362 Query 1357 TTAATCACAAACTTCCCAAGGACAGTTTACGGAAGAGACAAAGAGTCAATGTCACTAAAA 1416 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct 1363 TTAATCACAAACTTCCCAAGGACAGTGTATGGGAGAGACAAAGAGTCAATGTCACTGAAA 1422 Query 1417 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAACTGCTGATT 1476 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1423 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAT-TGCTGATT 1481 Query 1477 CTTCTGCTTCTTTCTCCttt------t--tt--t---CAGGTTTTTCTCTATT--AAGAT 1521 |||||| ||||||||||||| | || | ||| |||||||||||| || || Sbjct 1482 CTTCTGTTTCTTTCTCCTTTAGCCCCTCGTTAATTTTCAGTTTTTTCTCTATTTGAA-AT 1540 Query 1522 ATTTAGTTTGTTGCTTCAGTGATACATTGGACGTGATATTACATATATAATATAC--ACA 1579 || ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| Sbjct 1541 ATATAGTTTGTTGCTTCAATGATACATTGGACGAGATATTACATATATAATATACGTACA 1600 Query 1580 CATATATTCAGAAGTTGCG 1598 ||||||||||||||||||| Sbjct 1601 CATATATTCAGAAGTTGCG 1619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78915256740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5