BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489963
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11300.1 | Symbols: | Protein of unknown function (DUF793) ... 1840 0.0
AT4G23530.1 | Symbols: | Protein of unknown function (DUF793) ... 274 2e-72
> AT4G11300.1 | Symbols: | Protein of unknown function (DUF793)
| chr4:6872151-6873541 REVERSE LENGTH=1391
Length=1391
Score = 1840 bits (996), Expect = 0.0
Identities = 1224/1326 (92%), Gaps = 48/1326 (4%)
Strand=Plus/Plus
Query 1 TTTATCAAAATTCTCTCTTTTTCCCACAAAAGATTCTCAAATTTGTTGTAATCTCTCCGT 60
|||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||
Sbjct 19 TTTATCAAAATTCTCTCTTTTTCCCA-AAAAGATTCACAAATTTGTTGTAGTCTCGCCG- 76
Query 61 TTAA-ATGGCGCCGGCGACGGAGCATCAGAGTTCGTTCTTGAGTCGAATCAGCCGTCGCA 119
|||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 77 TTAAGATGGCGCCGGCGACGGAGCATCAGAGCTCGTTCTTGAGTCGACTAAGCCGTCGCA 136
Query 120 GTCAGGTTGTTTCCATGGAGGTTAATCACGAGCAAGAGCTCGAAGAACTCGAAGATTTTC 179
||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 137 ATCAAGTGGTTTCCATGGAGGTTAACCACGAGCAAGAGCAAGAAGAACTCGAAGATTTTC 196
Query 180 AGAAACACGTAGCTGAGCGTTTCACCGAGCTCTTACCACCGTCGGATTCGCCGGAATCTC 239
| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 197 AAAAACACGTAGCTGAACGTTTCGCGGAGCTCTTACCACCGTCGGATTCGCCGGAATCTT 256
Query 240 ACCCGATTCTTTCGATCCAGTGGCTGAGGAAGCTTCTTGATGCTTTCATGTCTATAGAAT 299
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 257 ACCCGATTCTTTCGATCCAGTGGCTAAGGAAGCTTCTTGATGTTTTCATGTCTATAGAAT 316
Query 300 CGGAGTTTCGTTCGGTTTTAACAACGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 359
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 317 CGGAGTTTCATTCGGTTTTAACATCGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 376
Query 360 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 436
Query 420 TCAACGGCGTTGACTCAGTCAGACAAATCCAGCGTTGTGCGGAGATTGCTGTTACGGCGT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 437 TCAACGGCGTTGACTCAGTCAGACAAATCCAACGTTGTGCGGAGATTGCTGTTACGGCGT 496
Query 480 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAACGGGCTCTTACAAGCC 539
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 497 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAAAGAGCTCTTACAAGCC 556
Query 540 TCCTCGCCGCTTTAAACGCCGATAAAAATAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 599
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 557 TCCTCGCCGCTTTAAACGCTGATAAAAACAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 616
Query 600 GGTCATCGACGGAGCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGC-G-G-AGGAG 656
||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 617 GGTCATCGACGGATCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGCAGCGGAGGAG 676
Query 657 GAGG-G-----------TGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 704
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GAGGAGGAGGAGCAGGGTGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 736
Query 705 TGACGGCGAATCTCGTAGCGCCACGTGGCGGAGAGGCGTCGCCGATGTATATAATGAGTA 764
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 737 TGACGGCGAATCTTGTAGCGCCACGTGGAGGAGAGGCGTCGCCGATGTATATAATGAGTA 796
Query 765 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAAACAAGTAACG 824
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 797 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAGACAAGTAACG 856
Query 825 GCTTAATGGTTCATTTACCGTTGCCGAAGAATCAGGTTTGGGCTAGCGCCGCCGTGAGCA 884
|||||||||||||| ||||| |||||||||||||||| ||||||| ||| |||||||| |
Sbjct 857 GCTTAATGGTTCATGTACCGCTGCCGAAGAATCAGGTATGGGCTAACGCGGCCGTGAGTA 916
Query 885 TCTCGGAGAGGATCGGAGAAGAGATGAAACGGAAGGAGACGCGGTGC-GGTGGATTGATG 943
||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 917 TCTCGGAGAGGGTCGGAGAAGAGATGAAACGGAAGGAGACGCG-TGGTGGTGGACTGATG 975
Query 944 GAGGAGATGCAGAGGATGGAGAGGATTGGGTTGAAGATGATGGAGTTCAGTGAAGGGTTT 1003
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 976 GAGGAGATGCAGAGGATGGAGAGGATCGGGTTGAAGCTGATGGAGTTCAGTGAAGGGTTT 1035
Query 1004 AGGTTTAATGGGGAGGAGGATGTGACGGCGGAAGTGGCGGAGATGGAGGAGATATGCCGG 1063
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1036 AGGTTTAATGGGGAGGAGGATGTGGTGGCGGAAGTGGCGGAGATGGAGGAGATTTGCCGG 1095
Query 1064 AAAATGGAAGATGGGCTTGAAGGGTTACAAAGAAGAGTTAGAGAAGTGTTTCATAGATTG 1123
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1096 AAAATGGAAGATGGGCTTGAGGGGTTACAGAGAAGAGTTAGAGAAGTGTTTCATAGGTTG 1155
Query 1124 GTGAAAAGCAGAAGTGAGATTCTTGAAGTGATTGATCACTGATTGTAATCTT--AA-TCT 1180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |
Sbjct 1156 GTGAAAAGCAGAAGTGAGATACTTGAAGTGATTGATCACTGATTGTAATCTTTTAACTTT 1215
Query 1181 -TTGA-GT-AAC-TCT--T-TT-G-GTTAA--------A----GAAAAGAGTA-AAATTA 1218
||| || || | | | || | ||||| | |||||||| | ||||||
Sbjct 1216 GTTGTTGTGAAAATTTAATCTTTGAGTTAACTCTTTTGATTAAGAAAAGAGAACAAATTA 1275
Query 1219 CAGGTTTTTGATTGTTTTATTTATGAATGATAATCTTTGATGTATATAAATTACAGTTCG 1278
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1276 CAGGTTTTT-ATTGTTTTATTTATG--TGATAATCTTTGATGTATATAAATTACAATTCG 1332
Query 1279 TAATTA 1284
||||||
Sbjct 1333 TAATTA 1338
> AT4G23530.1 | Symbols: | Protein of unknown function (DUF793)
| chr4:12279075-12280851 FORWARD LENGTH=1777
Length=1777
Score = 274 bits (148), Expect = 2e-72
Identities = 656/885 (74%), Gaps = 99/885 (11%)
Strand=Plus/Plus
Query 335 CAGATCTCGAAACCTCCG---TTGGATAA-GCTTGTACCGGAGATGCTTGATCGGATTGT 390
|||||||||||| | ||| || || || | || | ||||| ||||||||||||||| |
Sbjct 394 CAGATCTCGAAATCGCCGTCTTTAGA-AAGGGTTTTGCCGGAAATGCTTGATCGGATT-T 451
Query 391 TAAA-GCTCTT-GATATT-TGTACCGCCGTAGTCAACGGCG-TTGACTCAGTCAGACAAA 446
|||| || || ||| || |||| |||||| || ||||| | |||| || || ||||| |
Sbjct 452 TAAAGGC-GTTAGAT-TTATGTAACGCCGTCGTTAACGG-GATTGATTCCGTTAGACAGA 508
Query 447 TCCAG-CGTTGTGCGGAGATTGCTGTTACGGCG-TTGAAACAAAC-GCCGTTAAGTGACG 503
|| | |||| ||||||||| ||||| |||||| || || | ||| ||||||| ||||||
Sbjct 509 GCC-GACGTTTTGCGGAGATAGCTGTCACGGCGCTT-AAGC-AACGGCCGTTATGTGACG 565
Query 504 GAAGCGTTAGGAGAGCTAAACGGGCTCTT-ACAAGCCTCCTC-GCCGCTTTAAACGCCGA 561
|||||||| | |||||||| || ||| || ||||| |||||| || |||||||| ||
Sbjct 566 GAAGCGTTCGTAGAGCTAAGCGTGCT-TTAACAAGTCTCCTCATTGGC-TTAAACGCTGA 623
Query 562 TAAAAATAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGAGGT---CATCGACGGAGC-A-G 616
| | | || | ||| | | | |||||||||||| | | || || || ||| | | |
Sbjct 624 TGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCA-GTAACCAAAGAAGGA-CGACG 681
Query 617 T---GGTC---GTCGTTTGG-TCGACGTAGCGGCGGAAGCGGAGGAGG-----A-GG--G 661
| |||| ||||||||| || |||||| | | ||||||||| | ||
Sbjct 682 TCACGGTCTTGGTCGTTTGGAACG-CGTAGCAATGTCACCGGAGGAGGATTATATGGCCA 740
Query 662 TGT-GTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAATGACGGCGAATCTCGT 720
|| || || ||||||||||| || ||||||||||||| || ||| ||| ||||| ||
Sbjct 741 AGTCGTCAGCAAGAATTGGTCTGCTTCGAAGCAGATTCAGGCGATGGTGGCCAATCTGGT 800
Query 721 AGC-GCCACGT-G-GC-GGAG----AGG--CGTC---GCCGATGTATATAATGAGTAGTG 767
|| ||||||| | || | || || || | |||| | || |||||||| ||||
Sbjct 801 -GCTGCCACGTGGAGCTGAAGCTTCCGGACCGGCAATGCCGGTTTACATAATGAGCAGTG 859
Query 768 TGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAAACAAGTAACG-GC 826
| ||||| ||||||||||| | |||| | |||||||||||||| ||||| | | |
Sbjct 860 TTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAAGCAGTGTTC 919
Query 827 TTAATGG-TTCATTTACCG-TTGCCGAAGA-ATCAGGTTTGGGCTAGCGCCGCCGTGAGC 883
|| ||| || || ||| || || || | | ||| ||||||||||||||| ||||
Sbjct 920 TT-GTGGCGCCA-TTGCCGCTT-CC-AAAACACCAGAATTGGGCTAGCGCCGCTATGAGT 975
Query 884 ATCTC-GGAGAGGATCGGAGAAGAGATGAAACGGAAGGAG-A-C---GCGGT-GCGGTGG 936
|| || ||||||||| || |||||||| |||||||||||| | | | ||| | |||||
Sbjct 976 AT-TCAGGAGAGGATTGGTGAAGAGATAAAACGGAAGGAGAAGCGTTGTGGTGGTGGTGG 1034
Query 937 ATTGATGGAGGAGATGCAGAGGATGGAGAGGATTGGGTTGAAGATGA-TGGAGTTCAGTG 995
||||||||||||||||||||||||||||| ||||||||| | | | |||| ||| | |
Sbjct 1035 ATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTT-ATCTTTAATGGAATTC-GCG 1092
Query 996 AAG-GGTTTAGGTTT-----A-ATGGGGAGGAGGATGTG-ACG--GCGGA-A-G-TGGCG 1042
|| ||||||||||| | ||| || ||||| ||| | | ||||| | | |||
Sbjct 1093 GAGAGGTTTAGGTTTCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAGAAGGTGGAT 1152
Query 1043 GAGATGGAGGAGATATGCCGGAAAATGGAAGATGGGCTTGAAGGGTTA-CAAAGA-AGAG 1100
|||||||||||||| |||||| |||||||| |||| ||| ||| || || ||| | ||
Sbjct 1153 GAGATGGAGGAGATTTGCCGGCGAATGGAAG-TGGGATTGGAGGATTTGCAGAGACA-AG 1210
Query 1101 TTAGAG-AAGTGTTTCATAGATTGGTGAAAAGCAGAAGTGAGATT 1144
| || | ||||||| ||||||||||||| |||||| | |||||||
Sbjct 1211 TGAG-GCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAGATT 1254
Score = 110 bits (59), Expect = 5e-23
Identities = 118/145 (81%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 64 AATGGCGCCG-GCGACGGAGCATC-AGAGTTCGTTCTTGAGTCGAATCAG---CCGTCGC 118
|||||| || |||||||| || || | || ||| ||||||||||||| ||| ||
Sbjct 96 AATGGC-TCGTGCGACGGAATTTCAAG-GCTCATTCCTGAGTCGAATCAGCATCCGCCGT 153
Query 119 AGTCAGGTTGTTTCCATGGAGGTTAATCACGAGCAAGAGCTCGAAGAACTCGAAG-ATTT 177
| |||| | || |||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 154 AATCAGATCGTCTCCATGGATGTCAATCACGAGCAAGAGCTCGAAGAACTCGA-GTATTT 212
Query 178 TCAGAAACACGTAGCTGAGCGTTTC 202
|||||||||||||| || ||||||
Sbjct 213 CCAGAAACACGTAGCCGAACGTTTC 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5