BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489971 Length=3335 Score E Sequences producing significant alignments: (Bits) Value AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF... 4870 0.0 > AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947476-6952445 REVERSE LENGTH=3451 Length=3451 Score = 4870 bits (2637), Expect = 0.0 Identities = 3175/3417 (93%), Gaps = 108/3417 (3%) Strand=Plus/Plus Query 1 AGAAACCCTAGAGTTGCTTCCGCTTCG-----C-T-TCTC---T---TCTTCTCTTATCA 47 ||||||||||||||||||||||||||| | | |||| | ||||||||| ||| Sbjct 3 AGAAACCCTAGAGTTGCTTCCGCTTCGCTTCTCGTCTCTCTTATCAGTCTTCTCTTTTCA 62 Query 48 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGC----------G-T--TA---TTTTTCGT 91 |||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 63 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGCGTTAGAGTTTGTTACTAGCTTTTTTCGT 122 Query 92 CTGAAACATGGCGAATTTTGCTAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 151 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 123 CTGAAACATGGCGAATTTTGCCAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 182 Query 152 TAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 211 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 242 Query 212 ATACAGAGCTTGGCAGAAACCTCTTGAAAAGATCATGTTTAAGTATCTTGATCTTTGTGT 271 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 243 ATACAGAGCTTGGCAGAAACCGCTTGAGAAGATCATGTTTAAGTATCTTGATCTTTGTGT 302 Query 272 TGACTTGAAGAGGGGTCGGTTTGCTAAGGATGGGTTGATTCAGTATCGTATTGTTTGCCA 331 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 303 TGACTTGAAGAGGGGTCGATTCGCTAAGGATGGATTGATTCAGTATCGTATTGTTTGCCA 362 Query 332 GCAAGTGAATGTCAGTTCTCTT-GAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 390 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 363 GCAAGTGAATGTCAGTTC-CTTGGAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 421 Query 391 AGAAAGCTGAGCAGGCTCGTTCTCAGGCTGATGCCCTTGAGGAGGCTCTTGATGTTGATG 450 | ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 422 ACAAAGCTGAGCAAGCTCGGTCTCAGGCGGATGCCCTTGAGGAGGCTCTTGATGTTGATG 481 Query 451 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTGAGTATTGTCAGTGGGGAGAAGG 510 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 482 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTAAGTATTGTCAGTGGGGAGAAGG 541 Query 511 GAAAAGATAGGTCTGACCGTGAATTGGTCACCCCATGGTTCAAG-TTCTTGTGGGAGACG 569 |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||| Sbjct 542 GAAAAGATAGGTCTGACCGTGAGTTGGTCACCCCATGGTTTAAGTTTC-TGTGGGAGACA 600 Query 570 TACAGGACAGTGCTTGAGATATTGCGAAACAACTCAAAGTTGGAGGCACTTTATGCGATG 629 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 TACAGGACAGTCCTTGAGATATTGCGAAACAACTCAAAGTTGGAAGCACTTTATGCGATG 660 Query 630 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 720 Query 690 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 780 Query 750 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAACTGTATCTGGACACAAGATTTGATCAG 809 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 781 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAGCTGTATCTGGACACAAGGTTTGATCAG 840 Query 810 TTGAAAGTTGCTACCGAGCTTGGGCTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 869 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 841 TTGAAAGTTGCTACTGAGCTTGGACTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 900 Query 870 TATGGACTAATGTGCATGGTCaaaaaaaCGCCCAAGTCATCTTTATTGATGGTTTATTAT 929 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TATGGATTAATGTGCATGGTCAAAAAAACGCCCAAGTCATCTTTATTGATGGTTTATTAT 960 Query 930 TCCAAATTGACCGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 989 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TCCAAATTGACTGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 1020 Query 990 TTTAAGCTATTTAGTCTGCAGAAAAATTTCAATAAGAATTTAAGCCAAAAGGATTTGCAG 1049 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1021 TTTAAGCTGTTTAGTCTGCAGAAAAATTTCAACAAGAATTTAAGCCAAAAGGATTTGCAG 1080 Query 1050 CTGATTTCATCATCTGTTGTCTTGGCGGCATTGTCCGTTCCACCGTTTGATCGGGCTCAG 1109 || || | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1081 CTAATAGCGTCATCTGTTGTCTTGGCGGCATTGTCCATTCCACCATTTGATCGGGCTCAG 1140 Query 1110 AGTGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCCAACCTC 1169 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1141 AGCGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCTAACCTC 1200 Query 1170 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAGAGATATGCTTTCCCGGTCAGCTCTT 1229 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1201 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAAAGATATGCTTTCCCGGTCAGCTCTT 1260 Query 1230 CTGTCAGAGCTGGTTTCAAGAGGTGTTCTGAGCTGTGCATCCCAGGAGGTCAAAGATCTT 1289 ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| Sbjct 1261 CTGTCAGAGCTGGTTTCAAAAGGTGTTTTGAGCTGTGCATCTCAGGAGGTCAAAGATCTT 1320 Query 1290 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1380 Query 1350 CTGGAAAAGATTTCAAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGCG 1409 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1381 CTGGAAAAGATTTCCAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGTG 1440 Query 1410 CAGCTTTCCCAATATGTTCCTGCTCTGGAGAAGCTTGCTACTCTGAGGCTACTACAGCAG 1469 || |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| Sbjct 1441 CAACTTTCCCAATATGTTCCTTCTCTGGAGAAGCTTGCTACTCTGAGGCTACTTCAACAG 1500 Query 1470 GTTTCTAAGATTTATCAAACCATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTT- 1528 || |||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1501 GTGTCTAAGATTTATCAGACAATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTTT 1560 Query 1529 CGAATTCTCAGTGGTAGAGAAGATATCTGTTGATGCTGTGAAGAACAATTTCGTTGCCAT 1588 | ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1561 C-AATTCTCAGAGGTAGAGAAGATTTCTGTTGATGCTGTGAAGAACAATTTTGTTGCCAT 1619 Query 1589 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1679 Query 1649 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1739 Query 1709 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCATAATACCAAATTTAGCGGATACTGT 1768 |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| Sbjct 1740 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCGTTATACCAAATTTAGCAGATACTGT 1799 Query 1769 TGAGAAAGAACACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1828 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 TGAGAAAGAGCACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1859 Query 1829 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1860 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1919 Query 1889 GAAGCTAACTGAGGAGGCAGAACAGAAGAGACTTGCAGCAGAGCTTGCAGAGAGAAGGAA 1948 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1920 GAAGCTAACTGAAGAGGCAGAACAAAAGAGACTTGCAGCAGAGCTTGCAGAGAGAAGAAA 1979 Query 1949 ACAAAGAATCCTTAGGGAGATAGAGGAGAAGGAGCTTGAAGAAGCTCAGGCTTTGCTGGA 2008 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 1980 ACAAAGAATCCTTAGAGAGATAGAGGAGAAGGAGCTTGAAGAAGCCCAAGCTTTACTGGA 2039 Query 2009 GGACACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCGCTTTTAGATGGAGAGAAGGT 2068 || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 2040 AGAGACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCACTTTTAGACGGAGAGAAGGT 2099 Query 2069 GACAAAGCAAACTGTGATGGAGAGGGCCTTAACTGAGCAAG-TCAAGGAAAGGCAAGAAA 2127 |||||||||| |||||| ||| ||||||||||||||||| | |||||||||||||||||| Sbjct 2100 GACAAAGCAATCTGTGAAGGAAAGGGCCTTAACTGAGCA-GCTCAAGGAAAGGCAAGAAA 2158 Query 2128 TGGAGAAGAAACTCCAAAAACTTGCCAAAACTATGGATTATTTGGAAAGAGCAAAGAGAG 2187 |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 2159 TGGAGAAGAAGCTTCAAAAGCTTGCCAAAACGATGGATTATTTGGAAAGAGCAAAGAGAG 2218 Query 2188 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2219 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2278 Query 2248 TTTATGAGCGCGAGCAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2307 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2279 TTTATGAGCGTGAACAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2338 Query 2308 TGAAGGAGAAAAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2367 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2339 TGAAGGAGAAGAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2398 Query 2368 TGATTAGTCGACGACAAGCAGAGTTTGACAGAATAAGGACGGAGAGAGAGGAGCGTATCA 2427 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2399 TGATTAGTCGTCGACAAGCAGAGTTTGACAGAATCAGGACGGAGAGAGAGGAGCGTATCA 2458 Query 2428 GCCAAATAATTCGAGCCAGGAAGCAAGAAAGGGATATTAAGAGGAAGCAGATATATTATT 2487 | ||||||| |||| | |||||||||||||||||| |||||||||||||||||||||| Sbjct 2459 GTAAAATAATCCGAGAGAAGAAGCAAGAAAGGGATATCAAGAGGAAGCAGATATATTATT 2518 Query 2488 TGACAATTgaagaagaaagaattaggaagctacaggaagaagaggaagctcgcaagcggg 2547 ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || Sbjct 2519 TGAAAATTGAAGAAGAAAGGATTAGGAAGCTGCAGGAAGAAGAGGAAGCTCGCAAGCAGG 2578 Query 2548 aagaagcTGAGAGGCTCAAGAAGGAACAAGCTGAACGCAAAGCAAAGTTGGATGAAA--T 2605 |||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| | Sbjct 2579 AAGAAGCTGAGAGGCTCAAGAAGGTAGAAGCTGAACGCAAAGCAAACTTGGAT-AAAGCT 2637 Query 2606 TGCTGAGAAGCAAAGGCagagagagagagagGTGGAGGAGAAAGGAAGGCTGGAACGAGA 2665 | ||||||||||||||||||||||| |||| |||| |||||| | |||| ||||||||| Sbjct 2638 TT-TGAGAAGCAAAGGCAGAGAGAGATAGAGCTGGAAGAGAAAAGTAGGCGGGAACGAGA 2696 Query 2666 AGCTGC-GTTGAAAGGAACTACTAATGCACCGCCTGCTCGCCTTGCAGAGCCTACAGTTA 2724 || || ||||| |||||||| | |||||| ||||||||||||||||||||||| |||| Sbjct 2697 AGA-GCTGTTGAGAGGAACTA--A-TGCACCACCTGCTCGCCTTGCAGAGCCTACTGTTA 2752 Query 2725 CTCCTGCTGGAACTGCCGCCCCTGCTGCTA-CAGCAGCAGCATCAGGTGCGG--GCAA-A 2780 |||||| ||||||| |||| || || || | ||||||||||| |||| || ||| | Sbjct 2753 CTCCTGTTGGAACTACCGCACCAGCAGC-AGCAGCAGCAGCAGCAGGAGCACCAGCAGCA 2811 Query 2781 --T-ATGTTCCTAAGTGGAAGCTCCAGACTACTGAGGTCTCATCACCACCAACAGCAGCA 2837 | ||||||| |||||||||| ||||||||||||||||||| || | | ||||| | Sbjct 2812 CCTTATGTTCCGAAGTGGAAGCGCCAGACTACTGAGGTCTCAGG-CC-C-ATCAGCA-C- 2866 Query 2838 CCAACACCATCAGAAACTGACCG-CTGGTCCAACCGTGGACCGCCTCCAGGAGATGACCA 2896 | |||| |||||||||||||||| | ||||||||||||| |||||||| ||||||||||| Sbjct 2867 C-AACATCATCAGAAACTGACCGAC-GGTCCAACCGTGGGCCGCCTCCCGGAGATGACCA 2924 Query 2897 CTGGGGAAACAGCAGAGGA-CCGGCTCAGAATACTGACCGGTGGACTAGT---------- 2945 |||||||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 2925 CTGGGGAAGCAACAGAGGAGCCG-CTCAGAATACTGACCGGTGGACTAGTAATAGGGAAA 2983 Query 2946 ---C----C-TCCAGCTGAAGGAGGAGACCGTTGGGGTCCTGGTCCTAGAGGCAGTGATG 2997 | | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2984 GATCTGGACCTCCAGCTGAAGGAGGAGACCGTTGGGGTTCTGGTCCTAGAGGCAGTGATG 3043 Query 2998 AACGCCGATCTGCATTTGGAAGCTCCAGACCCAGGCCAACACAGCGTTGAGTAATAATAA 3057 | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3044 ATCGCCGATCCACATTTGGAAGCTCCAGGCCCAGGCCAACACAGCGTTGAGTAATAATAA 3103 Query 3058 ATTTTTTGGTCTCAATCTCCATGGGAATGAATGAAA--GGTTATATCTCTGGATTTTCAA 3115 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 3104 TTTTTTTGGTCTCAATCTCCATGGGAATGAATGAAAAAGGTTAT--CTCTGGATTTTCAA 3161 Query 3116 CATCACAGCACTCCTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3175 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3162 CATCACAGCACTCTTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3221 Query 3176 TTTATATGTTTT-ATGAAAGATTTTAAAACATGTTAAGACTCGTTTTTTGCTCTACACAA 3234 |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 3222 TTTATAAGTTTTTATGAAAGATTTTAAAACATGTTA-GACTCGTTTTTTGCTCTACACA- 3279 Query 3235 CACCAAGAGAGAGTTGCTATTTCCTTCTTCGGTTGGATCTTT----GCTTGTCCAA---- 3286 | ||| |||||||||| ||||||||||||||||||||||||| | |||||||| Sbjct 3280 C-CCA-GAGAGAGTTGTTATTTCCTTCTTCGGTTGGATCTTTCTTTGTTTGTCCAATTTA 3337 Query 3287 ---C----TTTCTGCTGTAAAAACCTTTGACATCGATCAGCTTCT-TTTCCATGCAA 3335 | ||||||||||||||||||||||||| ||||||||||| |||| | |||| Sbjct 3338 TTTCCAACTTTCTGCTGTAAAAACCTTTGACATTGATCAGCTTCTCTTTCAA-GCAA 3393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 165952247444 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5