BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489990 Length=1740 Score E Sequences producing significant alignments: (Bits) Value AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protei... 2588 0.0 AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:... 67.6 4e-10 > AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein | chr4:7071860-7075501 FORWARD LENGTH=2035 Length=2035 Score = 2588 bits (1401), Expect = 0.0 Identities = 1626/1731 (94%), Gaps = 30/1731 (2%) Strand=Plus/Plus Query 1 TATGGCGACACCGAATCAGGAATCAATCGACACTTTCATCAGCATCACCGGCGCTTCAGA 60 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 95 TATGGCGACACCGAATCAGGAAGCAATCGACACTTTCATCAGCATCACCGGCGCTTCTGA 154 Query 61 GGCCGTCGCTCTTCAGAAACTCGAGGAACATCGTGGTGATCTTAATCAAGCTGTGAATGC 120 |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 155 CGCCGTCGCCCTTCAGAAACTCGAGGAGCATCGTGGTGATCTTAATCAAGCAGTGAATGC 214 Query 121 ATATTTCGGCGAGGGAGATCGAAATGTAGTAAGTGAAGCGCCGGTTAATATTTCTCG-TG 179 ||||||| |||| |||||||||||||||||| |||||||||||||| | | | | || Sbjct 215 ATATTTCAGCGAAGGAGATCGAAATGTAGTACGTGAAGCGCCGGTT-A-A----T-GATG 267 Query 180 ATGATGAAATGGATATAGATGATGTGATTCCGCCTCCACAATCTCCTCTATCTATGTTCA 239 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 268 ATGATGAAATGGATATAGATGATGTGATTCCGGCTCCACAATCTCCTCTCTCTATGTTCA 327 Query 240 ATGCAGCTAGAACGA-TGG--G-CCATCCCTTTTCGCTTTTGGATTCAGACTTTGCTAGA 295 ||||||||||||| | ||| | || ||||||||||||||||||||| |||||||||||| Sbjct 328 ATGCAGCTAGAACAATTGGCCGTCC-TCCCTTTTCGCTTTTGGATTCGGACTTTGCTAGA 386 Query 296 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTTATCCCAGGGAG 355 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 387 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTCATCCTAGAGAG 446 Query 356 GTTAGGCAGATACCAATAGAGGTTAAGGATAGCAGTGGGCCATCAGGACGATCTAGTGAT 415 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 447 GTTAGGCAGATACCTATAGAGGTTAAGGATAGCAGTGGGCCATCTGGACGATCTAGTGAT 506 Query 416 GCTCCTACTATTGAAGATGTGACAGAAACAACACATGTTCAGGGTCCAG---CTACTCAA 472 |||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| Sbjct 507 GCTCCTACTATTGAAGATGTGACAGAAACAGCTCATGTTCAGGGTCCAGTAACTACCCAA 566 Query 473 GGAACTGTTATTATAGATGAAGAGAGTGATGATGATATTCCTTTTGCTCCAATGGGACGA 532 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 567 GGAACTGTTATTATTGATGAAGAGAGTGATGATGATATTCCTTTTGCACCAATGGGACGA 626 Query 533 AGTAGGCAAGACAGACCTGCTGGTTCTGAAGCC---AATAATAATCAAGATTACAATGAT 589 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 627 AGTAGGCAAGACAGACCTGCTGGTTCTGTAGCCAATAATAATAATCAAGATTACAATGAT 686 Query 590 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGAGGCTGAGGGATCA 649 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 687 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAAAGAGGCTGAGGGATCA 746 Query 650 AATAACCCTTTACTTGGAGAGAGGCCACCTCACATGGAAGATGATGATGACATAGCAAAA 709 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 747 AGTAACCCTTTACTTGAAGAGAGGCCACTTCACATGGAAGATGATGATGACATAGCAATA 806 Query 710 GCTGTTACGATGTCACTGAAGTCAGCAGAGGAAGAAGTTTTGCGCAGTCAAGAGCT-TAT 768 |||||||| |||||| |||||||||| ||||||||||||||||||||||||| | | || Sbjct 807 GCTGTTACAATGTCATTGAAGTCAGCGGAGGAAGAAGTTTTGCGCAGTCAAG-GGTATAA 865 Query 769 GCCCTCAACCTCAGAAATAGGAGCTTCTGAAGTGACTGCTGCTCAAGGACCTCAGGATAC 828 | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 866 GGCCTCAACCTCGGAAATAGGAGCTTCTGCAGTGACTGCTGCTCAAGGACCTCAGGATAC 925 Query 829 CCAAGCCCTGAATGGAAGATTGGCGGCACCTAGCTCACCATTTGATGATGACTCTGATGA 888 ||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 926 CCAGGCCCTGAACGGAAGATTGGCAGCACCTAGTTCACCATTTGATGATGACTCTGATGA 985 Query 889 CGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 948 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 TGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 1045 Query 949 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAAGGTGCAAGTAGTAA 1008 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1046 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAACATGCAAGTATTAA 1105 Query 1009 TCCACCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1068 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 TCCAGCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1165 Query 1069 TGATGAAGCTGTCATGCTTGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1128 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1166 TGATGAAGCTGTCATGCTCGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1225 Query 1129 TCATCTTCCATATAT-ACCTCCTCAGCCGTGGGCACAACCCCGTCCACCCTCACCTTCAC 1187 ||||||||||| | | ||||||||||||| |||| ||||| ||||||||||||||||| | Sbjct 1226 TCATCTTCCAT-TCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGC 1284 Query 1188 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCATCCCTGCAAG 1247 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1285 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCGTCCCTGCAAG 1344 Query 1248 CTGACCGAGATAAAGAAATGAAATCCATAAGAGATGCTGAGGCACGTCAGCTagaggaag 1307 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1345 CTGACCGAGATAAAGAAATGAAGTCCATTAGAGATGCTGAGGCACGTCAGCTAGAGGAAG 1404 Query 1308 aaactgctagaaaggcttttctggaggaagaaaagaaaaaagaggaagaagctcaaagaa 1367 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1405 AAACTGCGAGAAAGGCTTTTCTGGAGGAAGAAAAGAAAAAAGAGGAAGAAGCTCAAAGAA 1464 Query 1368 aaCTCGAGGAGGAACAGGAGCTAGATAGGCAATTAGACGCAAAAGAAGCTTCTCTACCTA 1427 ||||||||||||||||||||||||| || ||| |||| ||||||||||| ||| |||||| Sbjct 1465 AACTCGAGGAGGAACAGGAGCTAGAAAGACAACTAGATGCAAAAGAAGCGTCTTTACCTA 1524 Query 1428 AGGAGCCTCAAGCAGACGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGCA 1487 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1525 AGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGAA 1584 Query 1488 CACGCCGTGGCCGCCGGTTCCTTAGATCTGACAAACTCCAATCCCTTTTCAACTTTATAG 1547 |||| || |||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 1585 CACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAACCCTTTTCAACTTTATAG 1644 Query 1548 ACATTGCCAGAGTGGTGAAACCCAACACTTATAGACTGGTGAGGCCATATCCGAGGCATG 1607 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1645 ACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTGGTGAGGCCATATCCGAGGCATG 1704 Query 1608 CGTTTGGAGATGGAGAAAGTGAGTCGACTCT-AAACGATCTTGGATTGACCAGCAAACAA 1666 ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1705 CGTTTGGAGATGGGGAAAGTGAGTCGAC-CTTAAACGATCTTGGATTGACCAGCAAACAA 1763 Query 1667 GAAGCATTATTCCTTGAGCTTATCTGAGCAAGTTTAAAGTTCTTAAATATA 1717 |||||||| |||||||||||||||| || ||||| | ||||||||||| Sbjct 1764 GAAGCATTGTTCCTTGAGCTTATCT-AGT---TTTAA-GCTCTTAAATATA 1809 > AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:317564-320895 REVERSE LENGTH=1719 Length=1719 Score = 67.6 bits (36), Expect = 4e-10 Identities = 42/45 (93%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 592 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGA 636 ||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct 666 AGAGGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAAGGA 710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86043734130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5