BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490003

Length=2305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11860.1 | Symbols:  | Protein of unknown function (DUF544) ...  3578    0.0  


> AT4G11860.1 | Symbols:  | Protein of unknown function (DUF544) 
     | chr4:7134084-7138503 REVERSE LENGTH=2344
Length=2344

 Score = 3578 bits (1937),  Expect = 0.0
 Identities = 2191/2311 (95%), Gaps = 28/2311 (1%)
 Strand=Plus/Plus

Query  1     aaaaaaaaaaaTTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCG-AAA  59
             |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  26    AAAAAATAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCGAAAA  85

Query  60    TTTGAC--TTTTTCGAATTTGATTTTT-ATTAGCTTTGGTTGAGATCATCATCGTCAATG  116
             ||||||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct  86    TTTGACTTTTTTTCGAATTTGTTTTTTCATTAGCTTTGGTTGATATCATCATCGTCAATG  145

Query  117   GCGACCGCTTCATCTTCAGAATATCCTAACGAAGAAACGCATACGAATCAAGAAGCGATG  176
             |||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct  146   GCGACCGCTTCATCTTCAGAATCTCCGAGCGAAGAAACGCAGACGAATCAAGAAGCGATG  205

Query  177   CAGCAGCAAGATTTGTTGCCAAAGGAAACTACTAATACTACGGAGGAAGAGGAGATTTTG  236
             |||||||||||  | || || |||| ||  ||   ||||||||| |  ||||||||||||
Sbjct  206   CAGCAGCAAGA--T-TTACCGAAGG-AA--AC---TACTACGGA-G--GAGGAGATTTTG  253

Query  237   TATAAGACGAAATCGATTCAGTTCCTTGGACGAACCACACCTATCATTCTCCAGAACGAA  296
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  254   TATAAGACGAAATCGATTCAGTTCCTTGGAAGAACCACACCTATCATTCTCCAGAACGAA  313

Query  297   AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTTCTTCTCTTGAGAAACAACTTGAAA  356
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  314   AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTGCTTCTCTTGAGAAACAACTTGAAT  373

Query  357   CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA  416
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  374   CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA  433

Query  417   CTGATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA  476
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434   CTCATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA  493

Query  477   CAGAACATTGCTGATGCAATTGATCTTCTTCCACGACTTACGACTGGAATTGATGTCAAT  536
             ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  494   CAGAACATTGCTGATGCAATTGATCTTCTTCCACGCCTTACTACTGGAATTGATGTCAAT  553

Query  537   ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACCCCTGAGTGTGCAATATTTGATTTA  596
             ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  554   ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAATGTGCAATATTTGATTTA  613

Query  597   CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCCCAGGATGTTGAAGCAGCTAAT  656
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  614   CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCTCAGGATGTTGAAGCAGCTAAT  673

Query  657   GCAATTGGCAGCAAGTCGTATAATGCTCTAATGGGTGAGCTAGTTGCCCTGGAGACGCAG  716
             |||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct  674   GCAATTGGTAGCAAATCGTATAATGCTCTTATGGGTGAGCTAGTTGCACTGGAGACACAG  733

Query  717   AATATAGAGGCTCAAGATGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA  776
             ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  734   AATGTAGAGGCTCAAGGCGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA  793

Query  777   ACTACTGCAGCTTTAGGGGTTCCTTCACCATGTCTTTCGAAAACAAGATCTTTTGATGAT  836
             |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  794   ACTACTGCAGTTTTAGGGGTTCCTTCACCTTGTCTTTCGAAAACAAGATCTTTTGATGAT  853

Query  837   TCTCCACCTGCGGCTGCAGAGCTTCGCAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA  896
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  854   TCTCCACCTGCGGCTGCAGAGCTTCGTAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA  913

Query  897   GAGTTGTTGCAAGCCTTGCAGTTATCACAGGAGCAGGGGAATGATTCAATTCCAAACACT  956
             ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct  914   GAGTTGTTGCAAGCCTTGCAGTTATCACAGGGGCAGGGGAATGATCCAACTCCAAACACT  973

Query  957   AATGGAGACTCAACCAATCAAGACTCTGCGTTCACATTTTCAGATGCAAGTCCAACTAGC  1016
             || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  974   AACGGAGACTCAACCAATCAAGATTCTGCGTTCACATTTTCAGATGCGAGTCCAACTAGC  1033

Query  1017  ACCCATGGTACTAATATCAGTCAGCTAGACCAGTTTAAATCTGATGATGATAAAGCATCA  1076
             ||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  1034  ACCCATATTACTAATATCAGTCAGCTAGACCAGTTCAAAACTGATGATGATAAAGCATCA  1093

Query  1077  GAAAATGATGGCAATATGATCAAAGTTGGGGAATTTCAGACACCGATTACAATTAAAAGT  1136
             ||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||||||
Sbjct  1094  GAAAATGATGGGAATATGATCAAAGTTGGGAAATTTCCGACAACGATTACAACTAAAAGT  1153

Query  1137  GAGGATCTCAACCATGATCAATTATCTTCGAAGCAAACTGGAGTTGAAACGGCCTGTGAT  1196
             |||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||||||
Sbjct  1154  GAGGATCTTAACCATGATCAATTATCTTCTAAGCAATCTGGAGGTGAAACGGCTTGTGAT  1213

Query  1197  GTTGAGAACGTGAGTAGCAGTAAAAAGGCCATTGTCGATGTAACTTCTTCTGAGGCGCTC  1256
             |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct  1214  GTTGAGAACGTGAGTAGCAGCAAAGAGGCCATTGTCGATGTAACTTCTTCTGAGGCACTC  1273

Query  1257  TCTGTGGATAAGGCTAATCTGGATTCAGCGAAAATTGAAAGCAGTTCTGAGAGTCTACTC  1316
             ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct  1274  TCTGTGGATAAGGGTAATCTGGAGTCAGCGAAAAGTGAAAGCAGTTCTGAGAGTGTACTC  1333

Query  1317  AAGTCTGATGCAGCTTCTGTTGATCCAGATTTTAGTTGCAGATCCCAGCATGACGATGTA  1376
             |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
Sbjct  1334  AAGTCTGATGCAGCTTCTATTGATCCAGATTTGAGTTGCAGATCCCAGCATGATGATGCA  1393

Query  1377  CCCAATGCGTTTA-CCTCACCTGTACCTACCGATGAACCTATGTACGAAGGTGAGGAATG  1435
             ||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1394  CCCAACGCTTTTATCC-CACCTGTATCTACCGATGAACCTATGTACGAAGGTGAGGAATG  1452

Query  1436  TGTAAACACAGTGGCTCCAGTTTGTGCAGACAAAGAACCTGTTTATGAAGGTGAGTCACT  1495
             ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1453  TGTAAACACAGTGCCTCCAGTTTGTGCAGACAAAGAACCCGTTTATGAAGGTGAGTCACT  1512

Query  1496  TCTCGGTAAAAGGGTTGAGAAGGATGTGGGTGATTGTTCTTCTGAAGGAAAGGCTACGGA  1555
             ||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct  1513  TCTTGGTAAAAGGGTTGAGAAGGATGTTGGTGATTGTTCTTCTGAAGGGAGGGCTACGGA  1572

Query  1556  TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA  1615
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1573  TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA  1632

Query  1616  ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTTAAAGAACGTGAACTCTGTGT  1675
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1633  ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTCAAAGAACGTGAACTCTGTGT  1692

Query  1676  TTTCTTCCGCAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT  1735
             ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1693  TTTTTTCCGGAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT  1752

Query  1736  GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT  1795
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1753  GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT  1812

Query  1796  TAATGGCGACACTGCATTCATGACTGCTACCTTCAAGGACTTCAAGATTGACAGCAGCAC  1855
             |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  1813  TAATGGTGACACTGCATTCATGACTGCTACCTTCAAGGACTTCACGATCGACAGCAGCAC  1872

Query  1856  AGGTGGCGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT  1915
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1873  AGGTGGTGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT  1932

Query  1916  TGCCAGCATCAACAATGTAGCGGACACAGACATAGATGTCAACTCTGATCTACAACTAGC  1975
             ||||||||||||||||||||||||  ||| |||||||||||| |||||||| ||||||||
Sbjct  1933  TGCCAGCATCAACAATGTAGCGGATGCAGGCATAGATGTCAATTCTGATCTGCAACTAGC  1992

Query  1976  AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGCAACCCAACTCCACA  2035
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1993  AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGTAACCCAACTCCACA  2052

Query  2036  ACCAACAAGTGTTGCTACCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA  2095
             |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2053  ACCAACTAGCGTTGCTGCCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA  2112

Query  2096  CAGGCCATCATCAGCTGCAGCGTCTTCGAGACACGACAGCAAATCCCCAAAAGATAAAGA  2155
             |||||||||||||||||| |  ||||||||||||||| |||||||||| |||||||||||
Sbjct  2113  CAGGCCATCATCAGCTGC-G--TCTTCGAGACACGACGGCAAATCCCCTAAAGATAAAGA  2169

Query  2156  TAGCAAATGTAGAATCATGTAAATCTTCATTTCACTTATGTAAATTTCCAACTTTTTAT-  2214
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | 
Sbjct  2170  TAGCAAATGTAGAATCATGTAAATCCTCATTTCACTTATGTAAATTTCCAACTTTTTCTT  2229

Query  2215  ACTCCCTAACTAATTTTAATCCTTTAAAAGCATTTTGGTTTTAACaaaaaaaaaaCTAAA  2274
             | |||||||||||||||||||||| |||||| |||||||||||||||||||     ||||
Sbjct  2230  ATTCCCTAACTAATTTTAATCCTT-AAAAGCTTTTTGGTTTTAACAAAAAA-----TAAA  2283

Query  2275  CTGTAATTGCGCTTTGCCTAAACTATTTTTT  2305
             |||||||||||||||| ||||||||||||||
Sbjct  2284  CTGTAATTGCGCTTTGACTAAACTATTTTTT  2314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 114407042055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5