BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490003
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11860.1 | Symbols: | Protein of unknown function (DUF544) ... 3578 0.0
> AT4G11860.1 | Symbols: | Protein of unknown function (DUF544)
| chr4:7134084-7138503 REVERSE LENGTH=2344
Length=2344
Score = 3578 bits (1937), Expect = 0.0
Identities = 2191/2311 (95%), Gaps = 28/2311 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaTTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCG-AAA 59
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 26 AAAAAATAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCGAAAA 85
Query 60 TTTGAC--TTTTTCGAATTTGATTTTT-ATTAGCTTTGGTTGAGATCATCATCGTCAATG 116
|||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 86 TTTGACTTTTTTTCGAATTTGTTTTTTCATTAGCTTTGGTTGATATCATCATCGTCAATG 145
Query 117 GCGACCGCTTCATCTTCAGAATATCCTAACGAAGAAACGCATACGAATCAAGAAGCGATG 176
|||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct 146 GCGACCGCTTCATCTTCAGAATCTCCGAGCGAAGAAACGCAGACGAATCAAGAAGCGATG 205
Query 177 CAGCAGCAAGATTTGTTGCCAAAGGAAACTACTAATACTACGGAGGAAGAGGAGATTTTG 236
||||||||||| | || || |||| || || ||||||||| | ||||||||||||
Sbjct 206 CAGCAGCAAGA--T-TTACCGAAGG-AA--AC---TACTACGGA-G--GAGGAGATTTTG 253
Query 237 TATAAGACGAAATCGATTCAGTTCCTTGGACGAACCACACCTATCATTCTCCAGAACGAA 296
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 254 TATAAGACGAAATCGATTCAGTTCCTTGGAAGAACCACACCTATCATTCTCCAGAACGAA 313
Query 297 AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTTCTTCTCTTGAGAAACAACTTGAAA 356
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 314 AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTGCTTCTCTTGAGAAACAACTTGAAT 373
Query 357 CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA 433
Query 417 CTGATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTCATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA 493
Query 477 CAGAACATTGCTGATGCAATTGATCTTCTTCCACGACTTACGACTGGAATTGATGTCAAT 536
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 494 CAGAACATTGCTGATGCAATTGATCTTCTTCCACGCCTTACTACTGGAATTGATGTCAAT 553
Query 537 ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACCCCTGAGTGTGCAATATTTGATTTA 596
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 554 ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAATGTGCAATATTTGATTTA 613
Query 597 CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCCCAGGATGTTGAAGCAGCTAAT 656
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 614 CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCTCAGGATGTTGAAGCAGCTAAT 673
Query 657 GCAATTGGCAGCAAGTCGTATAATGCTCTAATGGGTGAGCTAGTTGCCCTGGAGACGCAG 716
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 674 GCAATTGGTAGCAAATCGTATAATGCTCTTATGGGTGAGCTAGTTGCACTGGAGACACAG 733
Query 717 AATATAGAGGCTCAAGATGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA 776
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AATGTAGAGGCTCAAGGCGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA 793
Query 777 ACTACTGCAGCTTTAGGGGTTCCTTCACCATGTCTTTCGAAAACAAGATCTTTTGATGAT 836
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 794 ACTACTGCAGTTTTAGGGGTTCCTTCACCTTGTCTTTCGAAAACAAGATCTTTTGATGAT 853
Query 837 TCTCCACCTGCGGCTGCAGAGCTTCGCAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA 896
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 854 TCTCCACCTGCGGCTGCAGAGCTTCGTAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA 913
Query 897 GAGTTGTTGCAAGCCTTGCAGTTATCACAGGAGCAGGGGAATGATTCAATTCCAAACACT 956
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 914 GAGTTGTTGCAAGCCTTGCAGTTATCACAGGGGCAGGGGAATGATCCAACTCCAAACACT 973
Query 957 AATGGAGACTCAACCAATCAAGACTCTGCGTTCACATTTTCAGATGCAAGTCCAACTAGC 1016
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 974 AACGGAGACTCAACCAATCAAGATTCTGCGTTCACATTTTCAGATGCGAGTCCAACTAGC 1033
Query 1017 ACCCATGGTACTAATATCAGTCAGCTAGACCAGTTTAAATCTGATGATGATAAAGCATCA 1076
|||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1034 ACCCATATTACTAATATCAGTCAGCTAGACCAGTTCAAAACTGATGATGATAAAGCATCA 1093
Query 1077 GAAAATGATGGCAATATGATCAAAGTTGGGGAATTTCAGACACCGATTACAATTAAAAGT 1136
||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||||||
Sbjct 1094 GAAAATGATGGGAATATGATCAAAGTTGGGAAATTTCCGACAACGATTACAACTAAAAGT 1153
Query 1137 GAGGATCTCAACCATGATCAATTATCTTCGAAGCAAACTGGAGTTGAAACGGCCTGTGAT 1196
|||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||||||
Sbjct 1154 GAGGATCTTAACCATGATCAATTATCTTCTAAGCAATCTGGAGGTGAAACGGCTTGTGAT 1213
Query 1197 GTTGAGAACGTGAGTAGCAGTAAAAAGGCCATTGTCGATGTAACTTCTTCTGAGGCGCTC 1256
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 1214 GTTGAGAACGTGAGTAGCAGCAAAGAGGCCATTGTCGATGTAACTTCTTCTGAGGCACTC 1273
Query 1257 TCTGTGGATAAGGCTAATCTGGATTCAGCGAAAATTGAAAGCAGTTCTGAGAGTCTACTC 1316
||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1274 TCTGTGGATAAGGGTAATCTGGAGTCAGCGAAAAGTGAAAGCAGTTCTGAGAGTGTACTC 1333
Query 1317 AAGTCTGATGCAGCTTCTGTTGATCCAGATTTTAGTTGCAGATCCCAGCATGACGATGTA 1376
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
Sbjct 1334 AAGTCTGATGCAGCTTCTATTGATCCAGATTTGAGTTGCAGATCCCAGCATGATGATGCA 1393
Query 1377 CCCAATGCGTTTA-CCTCACCTGTACCTACCGATGAACCTATGTACGAAGGTGAGGAATG 1435
||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1394 CCCAACGCTTTTATCC-CACCTGTATCTACCGATGAACCTATGTACGAAGGTGAGGAATG 1452
Query 1436 TGTAAACACAGTGGCTCCAGTTTGTGCAGACAAAGAACCTGTTTATGAAGGTGAGTCACT 1495
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1453 TGTAAACACAGTGCCTCCAGTTTGTGCAGACAAAGAACCCGTTTATGAAGGTGAGTCACT 1512
Query 1496 TCTCGGTAAAAGGGTTGAGAAGGATGTGGGTGATTGTTCTTCTGAAGGAAAGGCTACGGA 1555
||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1513 TCTTGGTAAAAGGGTTGAGAAGGATGTTGGTGATTGTTCTTCTGAAGGGAGGGCTACGGA 1572
Query 1556 TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA 1632
Query 1616 ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTTAAAGAACGTGAACTCTGTGT 1675
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1633 ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTCAAAGAACGTGAACTCTGTGT 1692
Query 1676 TTTCTTCCGCAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT 1735
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TTTTTTCCGGAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT 1752
Query 1736 GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT 1812
Query 1796 TAATGGCGACACTGCATTCATGACTGCTACCTTCAAGGACTTCAAGATTGACAGCAGCAC 1855
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1813 TAATGGTGACACTGCATTCATGACTGCTACCTTCAAGGACTTCACGATCGACAGCAGCAC 1872
Query 1856 AGGTGGCGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT 1915
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 AGGTGGTGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT 1932
Query 1916 TGCCAGCATCAACAATGTAGCGGACACAGACATAGATGTCAACTCTGATCTACAACTAGC 1975
|||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||
Sbjct 1933 TGCCAGCATCAACAATGTAGCGGATGCAGGCATAGATGTCAATTCTGATCTGCAACTAGC 1992
Query 1976 AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGCAACCCAACTCCACA 2035
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1993 AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGTAACCCAACTCCACA 2052
Query 2036 ACCAACAAGTGTTGCTACCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA 2095
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 ACCAACTAGCGTTGCTGCCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA 2112
Query 2096 CAGGCCATCATCAGCTGCAGCGTCTTCGAGACACGACAGCAAATCCCCAAAAGATAAAGA 2155
|||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||
Sbjct 2113 CAGGCCATCATCAGCTGC-G--TCTTCGAGACACGACGGCAAATCCCCTAAAGATAAAGA 2169
Query 2156 TAGCAAATGTAGAATCATGTAAATCTTCATTTCACTTATGTAAATTTCCAACTTTTTAT- 2214
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2170 TAGCAAATGTAGAATCATGTAAATCCTCATTTCACTTATGTAAATTTCCAACTTTTTCTT 2229
Query 2215 ACTCCCTAACTAATTTTAATCCTTTAAAAGCATTTTGGTTTTAACaaaaaaaaaaCTAAA 2274
| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 2230 ATTCCCTAACTAATTTTAATCCTT-AAAAGCTTTTTGGTTTTAACAAAAAA-----TAAA 2283
Query 2275 CTGTAATTGCGCTTTGCCTAAACTATTTTTT 2305
|||||||||||||||| ||||||||||||||
Sbjct 2284 CTGTAATTGCGCTTTGACTAAACTATTTTTT 2314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114407042055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5