BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490014 Length=1157 Score E Sequences producing significant alignments: (Bits) Value AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177... 1578 0.0 AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:1200698... 837 0.0 > AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177840 REVERSE LENGTH=1439 Length=1439 Score = 1578 bits (854), Expect = 0.0 Identities = 1083/1187 (91%), Gaps = 41/1187 (3%) Strand=Plus/Plus Query 4 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACttttttttttCTTCT 63 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 12 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACTTTTTTTTTTGTTCT 71 Query 64 TC-TTCC---C---AG---ACAACGATCTCACTCAATCAT---C-------A-AAA-ACG 101 || | || | || ||||||||||||||||||||| | | ||| ||| Sbjct 72 TCGTCCCGGACAAGAGAAAACAACGATCTCACTCAATCATCGGCGTGAGGGATAAAGACG 131 Query 102 ATGGCCTTTACTCTAACAATCCCCCGGCTTTCTACAATTTCTCGCAAACCCATCACTTGT 161 ||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 132 ATGGCTTTTACTCTAACAATCCCTAGATTTTCTGCAATTTCTCGCAAACCCATCACTTGT 191 Query 162 TCTTCTTC---G--A-A--G-ACTGCTCACTTTACTCATGGACGATCGATTTCTCTCAGA 212 |||||||| | | | | |||||| |||||| |||||||||||||||||||||||| Sbjct 192 TCTTCTTCGAGGACACAGTGTCCTGCTCCCTTTACCCATGGACGATCGATTTCTCTCAGA 251 Query 213 AGAAGACTT-CTCTTATTGCCCCTTCAAGCTTCTACTGATCAATCAGGTCAGGTTGGTGG 271 |||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 252 CGAAGACTTAC-CTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGGTCAGGTGGGTGG 310 Query 272 GGAAGAAGTTGATGGCAAGATTTTGCCATATTGTAGCATCAACAAGAGTGAGAAGAGAAC 331 ||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 311 GGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAAC 370 Query 332 AATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCTATTACGAAGGCAA 391 ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 371 TATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATGCAATCGTTTTATTACGAAGGCAA 430 Query 392 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 490 Query 452 CAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCTTGAAGCTTCAATGGCTTATGT 511 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 491 CAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGT 550 Query 512 CTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAATTGAAACTAAAGAT 571 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 551 CTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGAT 610 Query 572 GGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 631 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611 GGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 670 Query 632 CAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCTGCAACTGTTGT 691 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 671 TAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCAGCAACTGTTGT 730 Query 692 TGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGGGTTTTGAAATCACGTACCTGCT 751 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 731 TGCTCTCGGACTATTTTTCTTTCTTGATGACATTACTGGTTTTGAAATCACGTACCTGCT 790 Query 752 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTTGCTGCGGTGCCTGCAATTGT 811 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 791 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTCGCTGCGGTGCCTGCAATTGT 850 Query 812 CTATCTGGCGCTATCACTCACCAAACTCATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 871 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 851 ATATCTGGCGTTATCACTCACCAAACTGATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 910 Query 872 TTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTTGGAACAATACTTTCCATCTCCAA 931 ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||| Sbjct 911 TTGCCCAAACTGTGGAACAGAGAATGTATCTTTCTTTGGAACGATACTATCCATCCCCAA 970 Query 932 TGATGGTAACACCAACAATGTCAAATGCTCTGGCTGTGGAACGGAGATGATCTATGACTC 991 |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 971 TGATAGTAACACCAACAATGTCAAATGCTCAGGCTGTGGAACGGAGATGGTCTATGACTC 1030 Query 992 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAAGCTTAAAACCTATGAGCCAAGGC 1051 ||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||| Sbjct 1031 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGGAAAGCTTAAATC-TAAGAGCCAAGGG 1089 Query 1052 AAATGTGGAAATGTATGTTAAATGA-TACTAACAGATGAATAAGGTGGAGAAATTAAAGA 1110 |||| ||| ||||||| |||| | |||||||| ||||| |||||||||||||| |||| Sbjct 1090 TTATGTAGAAGTGTATGTAAAATTAATACTAACAAATGAAGAAGGTGGAGAAATTGAAGA 1149 Query 1111 AAAAGAAGAATATCAAAAGAGTTTGTTTGTGTTCTGTTTTGTATAAT 1157 | ||| |||| | | |||| ||||| || |||||||||||||| Sbjct 1150 AGAAGGAGAAAAACCAAAG--TTTGTATG----CTGTTTTGTATAAT 1190 > AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12006986-12009520 FORWARD LENGTH=1419 Length=1419 Score = 837 bits (453), Expect = 0.0 Identities = 725/857 (85%), Gaps = 16/857 (2%) Strand=Plus/Plus Query 197 ATCGATTTCTCTCAGAAGAAGACTTC-TCTTATTGCC-CCTTCAAGCTTCTACTGATCAA 254 |||||||||| | ||||||||| || |||| ||||| | | |||| | || || ||| Sbjct 309 ATCGATTTCTTTGAGAAGAAGA-GTCTTCTTGTTGCCTGC-TAAAGCCACAACAGAGCAA 366 Query 255 TCAGGT-CAGGTTGGTGGGGAAGAA-GTTGATGGCAA-GATTTTGCCATATTGTAGCATC 311 |||||| || || || || | | || || ||| |||| | ||||||| |||||||||||| Sbjct 367 TCAGGTCCA-GTAGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCCTATTGTAGCATC 423 Query 312 AACAAGAG-TGAGAAGAGAACAATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCA 370 |||||| | |||||||| |||||| || |||||||||||||||||||||||||| |||| Sbjct 424 AACAAG-GCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCA 482 Query 371 ATCGTTCTATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGA 430 ||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 483 ATCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGA 542 Query 431 AGAGTTGATGTGGGAAGGAAGCAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCT 490 |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 543 AGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAGTTCCGATGAACAAAGATT-CT 601 Query 491 TG-AAGCTTCAATGGCTTATGTCTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATA 549 || ||||||| ||||||||||| |||||||| |||||||||| ||||||||| ||||||| Sbjct 602 TGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATA 661 Query 550 AGCTCAAATTGAAACTAAAGATGGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCA 609 |||||||| | ||||||||||| || || || || |||||| | |||||||||||||||| Sbjct 662 AGCTCAAACTCAAACTAAAGATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCA 721 Query 610 GTCTTCGTAGTAAAAAGGTTTACAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGT 669 |||| |||||||||||||| || |||||||| || | ||||| ||||||||||| |||| Sbjct 722 GTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGT 781 Query 670 TGAATGTACCTGCAACTGTTGTTGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGG 729 ||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||||| | Sbjct 782 TGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAG 841 Query 730 GTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGG 788 ||||||| ||||| ||| | | | |||||||| ||||||| ||||||||| ||||| ||| Sbjct 842 GTTTTGAGATCACATACAT-CATGGAGCTTCCAGAACCATACAGTTTCATATTCACTTGG 900 Query 789 TTTGCTGCGGTGCCTGCAATTGTCTATCTGGCGCTATCACTCACCAAACTCATCCTCAAA 848 || ||||| ||||||| ||||| |||||||| ||||| |||||||| | ||| |||| Sbjct 901 TTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAG 960 Query 849 GACTTCTTGATCTTGAAGGGCCCTTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTT 908 |||||||||||||||||||| |||||||| || |||||||| || || ||||||||| Sbjct 961 GACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTT 1020 Query 909 GGAACAATACTTTCCATCTCCAATGATGGTAACACCAACAATGTCAAATGCTCTGGCTGT 968 |||||||| || || ||||||| | || || ||||||| |||||||||| | ||| Sbjct 1021 GGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAACTGC 1080 Query 969 GGAACGGAGATGATCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAA 1028 ||||| | |||| | |||||||| |||||| | ||||||||||| ||||||||| || || Sbjct 1081 GGAACCGCGATGGTGTATGACTCGGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAA 1140 Query 1029 GCTTAAAACCTATGAGC 1045 ||||||| ||| ||||| Sbjct 1141 GCTTAAACCCTGTGAGC 1157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56776816395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5