BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490019 Length=1221 Score E Sequences producing significant alignments: (Bits) Value AT4G12000.1 | Symbols: | SNARE associated Golgi protein family... 1502 0.0 AT4G22850.1 | Symbols: | SNARE associated Golgi protein family... 514 8e-145 > AT4G12000.1 | Symbols: | SNARE associated Golgi protein family | chr4:7193270-7195152 REVERSE LENGTH=1388 Length=1388 Score = 1502 bits (813), Expect = 0.0 Identities = 1020/1115 (91%), Gaps = 34/1115 (3%) Strand=Plus/Plus Query 73 CTCGATGACTTATCACGAGGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 132 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 207 CTCGATGACTTATCACGAAGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 266 Query 133 AGATGGAGTTGAGAAATTAGGGCATTATGTTAAACTTACTGAGGAAGAT-G-A-TCCATC 189 |||||||||||| |||||||| |||||||||||||||||||| | | | | | | |||| Sbjct 267 AGATGGAGTTGATAAATTAGGTCATTATGTTAAACTTACTGAAG-ATTTCGAAGTACATC 325 Query 190 -AC-CGtcttcttcttc-ttcttcttcttcttcttcttcttcttcttcttcATGTGGACA 246 || | | | ||||| || || | ||||||||||||||||||||||| Sbjct 326 GACAAG-AAAC-AGAACAAGAATCTTCATCATCACCGTCTTCTTCTTCTTCATGTGGACA 383 Query 247 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTT 306 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 384 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTT 443 Query 307 GGGTCTCGCTGGTTACAAATGGCT-CGCTCCTTTAATCATGGATAAGGAGCTAATCCCTC 365 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct 444 GGGTCTCGCTGGTTACAAATGGCTATAC-CCTTTAATCATGGATAAGGAGCTAATCCCAC 502 Query 366 TCATTAAATGGGAGATGGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCAT 425 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 503 TCATAAAATGGGAGATGGAGACATTTACACACCCTGTGTGCGGTATTCTTGTGTTTGCAT 562 Query 426 CAGTGTCATTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 485 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 CAGTCTCTTTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 622 Query 486 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 682 Query 546 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 742 Query 606 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTC 665 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 743 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCATCAGTTTC 802 Query 666 GTGCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCTCTTTATAACTACTGCGCTG 725 ||||||| ||||||||||||||||||||||| |||||| || | ||||| |||||||||| Sbjct 803 GTGCAGTTACCTTAATCCGGATTTCTCCATTTCCTTTTGCTGTATATAATTACTGCGCTG 862 Query 726 TTGCAACTCGTGTAAAGTTCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 863 TTGCAACTCGTGTGAAGTTCGGTCCTTACATGGCTGGTTCTCTCGTAGGCATGGCGCCGG 922 Query 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844 ||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 923 AGATTTT-TGTCGCAATTTATACAGGGATTCTTATAAGGACATTGGCAGATGCATCCACT 981 Query 845 GCGGAACAAGAGGGTCTCTCGATTCTTCAGATTGTTCTCAACATTCTTGGTTTTGTAGCA 904 ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 982 GCGGAACAAAAGGGTCTCTCGATTCTTCAAATTGTTCTCAACATTTTTGGTTTTGTAGCA 1041 Query 905 ACTGTTGTGACAACTGTTCTGATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 964 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1042 ACTGTTGTGACAACTGTTCTCATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 1101 Query 965 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCGGAAGTTTTGTCTC 1024 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1102 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCAGAAGTTATGTCTC 1161 Query 1025 TGCTTATTACCAAAGTACAGGTTTT-GTCCATGATGTGAAAAAACT-T-G-TTTT-GGT- 1078 |||||||| |||||||||||||||| ||||||||||||||| |||| | | |||| ||| Sbjct 1162 TGCTTATTCCCAAAGTACAGGTTTTCGTCCATGATGTGAAAGAACTCTTGATTTTTGGTC 1221 Query 1079 T-TGTCAT--TACA---A-A-C-GAGAAATGAAAGGGTAGAAAAGAAAAATTATAATGAC 1129 | ||| | | | | | |||||||||||||||| |||||||| |||||||||| Sbjct 1222 TCTGTTTTGGTTTGTTTATAGCCGAGAAATGAAAGGGTATAAAAGAAA--TTATAATGAC 1279 Query 1130 TA-A-AAACAC-A-CAAAATTCTCTAACACGAttt 1160 || | |||||| | | ||| ||||||||||||||| Sbjct 1280 TATATAAACACTAACTAAACTCTCTAACACGATTT 1314 > AT4G22850.1 | Symbols: | SNARE associated Golgi protein family | chr4:11994014-11996229 FORWARD LENGTH=1359 Length=1359 Score = 514 bits (278), Expect = 8e-145 Identities = 598/748 (80%), Gaps = 40/748 (5%) Strand=Plus/Plus Query 258 TTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTTGGGTCTCGCT- 316 ||||||||||| |||||||| |||||| || | ||||| |||| |||| | | | | Sbjct 338 TTTGGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTG-TG 396 Query 317 GGTTACAAATGGCTCGCTCCTTTAATCATGGATAAGGAGCTAATCCCTCTCATTA-AATG 375 ||||||| ||| ||| ||| || ||||||||||||||||| || || || | || |||| Sbjct 397 GGTTACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTA-TACAATG 455 Query 376 GGAGAT-GGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCATCAGTGTC-A 433 |||||| || || |||||||| || ||||| ||| ||||||| |||||||||||| | | Sbjct 456 GGAGATACGA-ACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGA 514 Query 434 TTA-TTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGATTACATT 492 || |||| | |||||| ||||| |||| || ||||||||| | |||||||| || || Sbjct 515 -TATTTCCAACT-ATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTT 572 Query 493 TGGTTATTTCTATGGCCTTCTCCTTACTCT-TC-CAGCTGTAGCTATTGGTGTTTCACTT 550 ||||||| ||||||| |||| |||| | | || |||||| |||| |||||||||| || Sbjct 573 TGGTTATGGCTATGGCTTTCTACTTA-T-TATCTCAGCTGCAGCTGTTGGTGTTTCGCTA 630 Query 551 CCTTACTTCATCAG-CTATCTCTTCCT-CAACAAAATTCAAGGTTGGTTAGAAAGATATC 608 |||||||| || | | | ||||| || | ||||||||||||| ||| |||||||||||| Sbjct 631 CCTTACTTTATTGGAC-AACTCTT-CTGCCACAAAATTCAAGGATGGCTAGAAAGATATC 688 Query 609 CAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTCGT- 667 | |||||||| || | || ||||||||||||| ||| | |||| ||||||| |||| | Sbjct 689 CTGATCAAGCAGCCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTC-TA 747 Query 668 GCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCT-CTTTATAACTACTGCGCTGT 726 |||||||||||||||||||||||||||||||| | | |||||||||||||| |||| Sbjct 748 TTAGTAACCTTAATCCGGATTTCTCCATTCCCTTA-CATTCTTTATAACTACTGTTCTGT 806 Query 727 TGCAACTCGTGTAAAGT-TCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785 ||||||||||| |||| | ||||||||||| | ||||||||| ||||||||| ||| | Sbjct 807 AGCAACTCGTGTTAAGTAT-GGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTG 865 Query 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844 || |||| | ||||||| || |||||||| ||| ||||| |||| | ||| ||||| || Sbjct 866 AGGTTTT-TGTCGCAATCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCT 924 Query 845 GCGGAACAAGAGGGTCTCTCGATT-CTTCAGATTG-TTCTCAACATTCTTGG-TTTTGTA 901 || ||| || ||||||||||| | | ||| | | ||||||||||||| || |||| || Sbjct 925 GCAGAAGAACAGGGTCTCTCGGTAACA-CAGGT-GATTCTCAACATTCTCGGCTTTT-TA 981 Query 902 GCAACTGTTG-TGACAACTG-TTCTGATCACTAAGTATGCGAAAAGACAGCTTGA-A-GT 957 ||||| || | | ||||| | |||| ||||| |||||||||||||||||||| || | | Sbjct 982 GCAACAGTGGCT-ACAAC-GATTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACG- 1038 Query 958 TATGAAGAAGGAGAAGGAAGCTTTGTTG 985 |||||||| ||| | ||||| |||||| Sbjct 1039 -ATGAAGAAAGAGGACGAAGCATTGTTG 1065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59989651275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5