BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490030
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12130.1 | Symbols: | Glycine cleavage T-protein family | c... 2165 0.0
> AT4G12130.1 | Symbols: | Glycine cleavage T-protein family |
chr4:7263599-7265812 FORWARD LENGTH=1517
Length=1517
Score = 2165 bits (1172), Expect = 0.0
Identities = 1330/1405 (95%), Gaps = 15/1405 (1%)
Strand=Plus/Plus
Query 1 GAAGAACAATACTAACAGAGCCTTCACA-AGAGATGTTTCGATTCAATTTTCGTCGTGAA 59
||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 9 GAAGAACGATACTAACAGAGCCTTCACAGAGAGATGTTTCGATTCAATTTCCGTCGTGAA 68
Query 60 ATCTCCAAATCTACCGGAATTTATCACCGGAAAATCCACAGCGGTCTAGAAGATGCCGGT 119
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 69 ATCTCCAAATATACCGGAATTTATCACCGGAAGATACACAGCGGTCTAGAAGATGCCGGT 128
Query 120 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 188
Query 180 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTAAGAAGATTCGGCGAATCCTCCGGCGAG 239
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 189 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTACGGAGATTCGGCGAATCCTCCGGCGAG 248
Query 240 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTTCGACTCCGCCTATGTATGCG 299
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 249 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTACGAATCCGCCTATGTACGCA 308
Query 300 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 309 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAGA 368
Query 360 TCCGAGGAAAAGCTTAATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 419
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCCGATGAAAAGCTTGATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 428
Query 420 TCGGTTGAGTTGTTTGCTGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 479
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCTGTTGAGTTGTTTGCAGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 488
Query 480 AAAAAGTATCGGTTGAGGTCCAAAGTGGATATTGAAAACGTTGCGGAGGAGTTTTCGTGT 539
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 489 AAAAAATATCGCTTGAGGTCCAAAGTGGATATTGAAAACGTTGCAGAGGAGTTTTCGTGT 548
Query 540 TGGCAGCGATACGGTAGGAATCTTTCTGGATCATCATCTGTCGGTTGGGGCGGTGGTGTT 599
|||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 549 TGGCAGCGTTACGGTAGGAATCTTACTGGATCATCATCTGTTGGTTGGGGTGGTGGTGTT 608
Query 600 GATCGTGCTGGTGAATCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GATCGTGCTGGTGAGTCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 668
Query 660 CCAAGGTTGGAATGTCTCGGTTACAGAAGCATCTTTCCGTCCGATGCAACCCCGCCTTTA 719
|| |||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 669 CCGAGGTTGGAGTGTCTCGGTTACAGAAGTATCTTTCCGTCTGATGCAACTCCGCCTTTA 728
Query 720 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTACCTTTTATGGAGATTAGAGCATGGA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 729 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTATCTTTTATGGAGATTAGAGCATGGA 788
Query 780 GTTGCCGAAGGATCAGCTGAAATCCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTT 839
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 GTTGCTGAAGGATCAGCTGAAATTCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTC 848
Query 840 GTTGGTCTTAATGCGATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GTTGGTCTTAATGCTATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 908
Query 900 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGATTCATCGATAGC 959
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 909 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGGTTTATCGATAGC 968
Query 960 AATGGAAAAGAGGTAAACCAGAAAATCGCGGCTGGAGCTGAAGTAGTTGAATCAGGAACG 1019
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 969 AATGGAAAAGAGTTAAACCAGAAAATTGCGGCTGGAGCTGAAGTAGTAGAATCAGGAACG 1028
Query 1020 GGCAAGAAAATGGGAACGGTTTCAACGGCTTTGGGTAGCCGAGGAATGGGTGTAATGAGG 1079
|||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 1029 GGCAAGAAAATGGGGACGGTTTCAACAGCTCTGGGTAGCCGGGGAATGGGTGTAATGAGG 1088
Query 1080 GTAGAGGAAGCCCTTAAACCATCAGCTGAATTAACAGTAAAGGACTCAGAGGACGTGAAA 1139
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1089 GTAGAGGAAGCCTTTAAACCATCAGCTGAATTAGCAGTAAAGGACTCAGAGGAGGTGAAA 1148
Query 1140 GTCGAGGCAATCAGACCAACATGGTGGCCAGCTGAGTGGTTTCAACAGAATCAATCAGGA 1199
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1149 GTCGAGGCAATCAAACCAACATGGTGGCCAGCTGAATGGTTCCAACAGAATCAATCAGGA 1208
Query 1200 GTTGCTGCAGCCTAGTAACTTACTAAGATTATTTTTGCAGTTTAAAAAA-TAAAGTTGAA 1258
||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 1209 GTTGCTGCAGCGTAGTAACTTACTAAGATTATTTTTGCAGTTGAAAAAAATAAAGTTGGA 1268
Query 1259 TACTTTCCGGCGAGGT------A----A--GCAACAAGCTCGTCGCTTTCATTGTATTCC 1306
|||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct 1269 TACTTTCCGGCGAGGTTTCTGTACTGGAAAGCAACAAGCTCGTAGCTTTCATTGTATTCC 1328
Query 1307 ACTGTCTAACTAATAAATGTTGGAACCTTCCGGCGAGTTT-TAGCCGCCGGATAATTTTG 1365
||| | |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 1329 ACTATTTAACTAATAAATGTTGGAACCTTCCGGCGAGTTTATAGCCGTCGGATAACTTTG 1388
Query 1366 TACTAATTGCTACAAATTTGGTTGT 1390
|||||| |||||||||||| |||||
Sbjct 1389 TACTAACTGCTACAAATTTTGTTGT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5