BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490066
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05590.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharact... 483 1e-135
> AT4G05590.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised
protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis
thaliana protein match is: Uncharacterised protein
family (UPF0041) (TAIR:AT4G22310.1); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2907111-2908557
FORWARD LENGTH=766
Length=766
Score = 483 bits (261), Expect = 1e-135
Identities = 363/410 (89%), Gaps = 16/410 (4%)
Strand=Plus/Plus
Query 221 TCGATGTGTGAACTTTTATGTTTATATGATGCCTCGTATTTTTGCT-ATTGTATCAGTGA 279
|||||||||||||||| |||||||||||||||||||||| || | |||||||||||||
Sbjct 278 TCGATGTGTGAACTTTAATGTTTATATGATGCCTCGTATGGCTG-TCATTGTATCAGTGA 336
Query 280 TCACAGGCACTGGACTTGTTTGGTCGCGTTACAGTACTGTAATCACTCCGAAAAACTGGA 339
||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 337 TCACAGGTACTGGACTTGTTTGGTCACGTTACAGCACTGTAATTACTCCGAAAAACTGGA 396
Query 340 ATCTCTTTAGCGTAAGTCTTGGAATGGCCGTGACAGGCATATACCAACTTACTCGTAAAA 399
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 397 ATCTCTTTAGCGTGAGTCTTGGTATGGCTGTGACAGGGATATACCAACTTACTCGTAAAA 456
Query 400 TAAAGCACGATTATGCATCTGAAGCAAATCCTATTGTTGCAAAAGAATGATGAAGATGAA 459
||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 457 TAAAGCACGATTATGTATATGAAGCAAATTCTATTGTTGCAAAAGAATGATGAAGATGAA 516
Query 460 GCCTTGTGGTTCTTATTAAAAACTA-ATCTTTC----A--TTC---CAAAA-TATCATCA 508
| ||| |||| ||||||||||| ||||||| | ||| ||||| ||| ||||
Sbjct 517 GATTTGCGGTTTTTATTAAAAACCCCATCTTTCTTGCAGATTCATTCAAAAATATTATCA 576
Query 509 TGTCAAGGCTTGATTTTGTTTGAATACCCAAATATTTTTT-GGGTTATAAATTGGTTATG 567
|||||||||||| |||||||| |||||||||| |||||| ||||| | ||||| |||||
Sbjct 577 TGTCAAGGCTTGGTTTTGTTTCCATACCCAAATCTTTTTTTGGGTTGTTAATTGTTTATG 636
Query 568 TTATCGTTAGAAAATGAAATACTGGTGTGAGTACTATGAAT-GTATAACT 616
|||| |||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 637 TTATAGTTAGAAAGTGAAATACTGGTGTGAGTACTAT-AATTGTATAACT 685
Score = 294 bits (159), Expect = 6e-79
Identities = 167/171 (98%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 33 AGaaaaaaaTCGATGGCAACTTCGAAGCTTCAAGCTCTCTGGAATCATCCAGCTGGACCT 92
||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 54 AGAGAAAAATTGATGGCAACTTCGAAGCTTCAAGCTCTTTGGAATCATCCAGCTGGACCT 113
Query 93 AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAACATTGCA 152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 114 AAGACAATTCATTTTTGGGCGCCGACGTTCAAGTGGGGTATAAGCATTGCCAATATTGCA 173
Query 153 GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT 203
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GACTTTCAAAAACCTCCAGAGACACTTTCATACCCTCAACAAATTGGTATT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5