BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490073
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03960.1 | Symbols: | Phosphotyrosine protein phosphatases ... 1142 0.0
> AT4G03960.1 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr4:1887528-1889211 FORWARD LENGTH=953
Length=953
Score = 1142 bits (618), Expect = 0.0
Identities = 747/806 (93%), Gaps = 21/806 (3%)
Strand=Plus/Plus
Query 1 AATACCATCATGACGTTAGATAGTTACGCCGGCGATGTTCACACTGTACCACAATCGGAG 60
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 137 AATACAATCATGACGTTAGAGAGTTACGCCGGCGATGTTCACACGGTACCACAATCGGAG 196
Query 61 AACTCGATGGAGGAGAGAGGCGGCGGTGAGCTATACGTGCCACCTCTTAACTTCGCTATG 120
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 197 AACTCGATGGAGGAGAGAGGCGGCGGTGAGCTTTTCGTGCCACCTCTTAACTTCGCTATG 256
Query 121 GTCGATAATGGAATTTTCCGTTCTGGTTTTCCTGAACCAGTCAGTTTCAGCTTCCTCCAG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 257 GTCGATAATGGAATTTTCCGTTCTGGTTTTCCTGAACCCGTCAGTTTCAGCTTTCTCCAG 316
Query 181 TCTCTGCGACTCCGATCCATCATATATTTGTGCCCTGAGGCATATCCAGAGGTGAATAGA 240
||| |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 317 TCTTTGCGTCTCAAATCCATCATATATTTGTGTCCTGAGGCATATCCAGAGGTGAATAGA 376
Query 241 GAATTTGCAAAATCAAATGGGATCCAAGTTTTTCAATTTGGAATTGAAAGATGCAAGGAA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GAGTTTGCAAAATCAAATGGGATCCAAGTTTTTCAATTTGGAATTGAAAGATGCAAGGAA 436
Query 301 CCCTTTGTTAATATCCCTGACGAGGTAATCCGAGAAGCATTACAAGTACTTCTAGATACA 360
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 437 CCATTTGTTAATATCCCTGACGAGGTAATCCGAGAAGCCTTACAAGTACTTCTAGATACA 496
Query 361 GAGAATCATCCTGTCTTGATTCATTGCAAAAGTGGCAAGCATCGGACGGGATGTCTTGTA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 497 GAGAATCATCCTGTCTTGATTCATTGCAAAAGTGGAAAGCATCGGACGGGATGTCTTGTA 556
Query 421 GGTTGTGTGAGGAAGATTCAGAGATGGTGTTTGTCCTCCATTTTCGATGAGTACCAAAGA 480
|||||||||||||||||||| |||||||||||||| || || ||||| ||||||||||||
Sbjct 557 GGTTGTGTGAGGAAGATTCAAAGATGGTGTTTGTCTTCTATCTTCGACGAGTACCAAAGA 616
Query 481 TTCGCAGCTGCGAAAGCTAGAATCTCAGACCAAAGATTCATGGAGCTCTTTGACATCTCC 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 617 TTCGCAGCTGCGAAAGCTAGAATCTCAGACCAGAGATTCATGGAGCTCTTTGACATCTCC 676
Query 541 AATCTAAAGCATTCACCACTCAACTTCTCATGTTCCAAGAGGTATAATAATACTATTGAT 600
|||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 677 AATCTAAAGCATACACCACTTTCCTTCTCATGCTCCAAGAGGTATACTAATACTATTGAT 736
Query 601 TACTGAA-AAACAAAATGTAT---TTATGTGTTGAATGCAAGTTGTAGTTTTTAAGCTAG 656
||||||| ||| ||||||||| || |||||||||||||| |||||||||| |||||||
Sbjct 737 TACTGAAGAAA-AAAATGTATAACTT-TGTGTTGAATGCAACTTGTAGTTTTGAAGCTAG 794
Query 657 ATGATGAAAATGGGAGATTTTCTTATCTTTCaataaaaatacgtttattcaaaattaaat 716
|||| ||| ||||||||||| |||||||||||||| | ||||||||| |||| ||||
Sbjct 795 ATGA--AAA-TGGGAGATTTTG--ATCTTTCAATAAAAGTCCGTTTATTCCAAATCAAAT 849
Query 717 aaataaaaatTGGATCGGA-GGTTGTAGAAATATACGCGACACTCCTTCATTTTAATTAA 775
||||||||||||||||||| ||||||||||| ||| | |||||||||| | |||
Sbjct 850 AAATAAAAATTGGATCGGATGGTTGTAGAAAAATAAGAGACACTCCTT--T---AAT--- 901
Query 776 TCCTTTTAAATGCTATCATGTAGAAC 801
|||||||||||||||||||||||||
Sbjct 902 -CCTTTTAAATGCTATCATGTAGAAC 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5